Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0828 ATGGGGGAAGTAGAGAATCGAGAGATGGATAATTTACCCCCGCCAAATGCTCAAACTGATAGTGCGGAACCGGGTAACGTGGGTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCAGAGCACCCTCATTTTCAGTCTCAGTCTCAGTCTCGGTGTCAATCGGAGTCATCGGCCGTGATGGTGGTGCAGAGTCAGTCGCAGCCAAAGTCCCCACAGCAGTTGATGGTTTTGCCCATTGGAACACAAGCGCCTCATTCTGTGAGAAAGCCAGATTCTCCGAAATCAAGATCAAGGTCTGTTGAAGTAAAAGATGCTACTCCAAAGAAGCAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGCGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGCTTCCAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTTCGACCAAAAATTGCTAGTAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGGTTGTAATGCTAGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGAAGAGAGACAAGCACTTTTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGCCCAGAGTTATGCTTTGGCCCTACAGGGAAGGATCCCCCCCTCAATGGCATATCGCAATTTCATCAGGCTAATAATATAATGTCTTCTGGCACGTCTACATCATCTCCCCTCCCTGTTGCTCATGTTGGTAGCCCAGCAGCACCGGGGCCTTCAAAGTTTTCATACAGGTCCTTATTAGCAGACCTCATCCAGCCGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGTGAAGCTGCCAAGAATTTAGCAGGTAATGTGTTTTCAGAATTTTTATGGTATTGCAAGGATCTAAAATTTTGTCCAGGAAGTTGGAGAGCTGTGTGCAATATGATTGGATCAGCTGGCATTGTGAATACTGTACACAATGATTAA 1263 44.97 MGEVENREMDNLPPPNAQTDSAEPGNVGSSDVPAKKLARQLDFTGFGGAVLPEHPHFQSQSQSRCQSESSAVMVVQSQSQPKSPQQLMVLPIGTQAPHSVRKPDSPKSRSRSVEVKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVNNMAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPTGKDPPLNGISQFHQANNIMSSGTSTSSPLPVAHVGSPAAPGPSKFSYRSLLADLIQPNDLKELCSVLVVLSSEAAKNLAGNVFSEFLWYCKDLKFCPGSWRAVCNMIGSAGIVNTVHND 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7480306 7487068 - Maker00022268 Lcy2g0828 625593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0828 420 MobiDBLite consensus disorder prediction 55 92 - -
Lcy2g0828 420 MobiDBLite consensus disorder prediction 102 116 - -
Lcy2g0828 420 MobiDBLite consensus disorder prediction 1 36 - -
Lcy2g0828 420 PANTHER TESMIN/TSO1-RELATED 52 366 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lcy2g0828 420 ProSiteProfiles CRC domain profile. 122 246 IPR005172 -
Lcy2g0828 420 MobiDBLite consensus disorder prediction 12 26 - -
Lcy2g0828 420 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 243 IPR005172 -
Lcy2g0828 420 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 158 IPR005172 -
Lcy2g0828 420 SMART CXC_2 206 247 IPR033467 -
Lcy2g0828 420 SMART CXC_2 121 161 IPR033467 -
Lcy2g0828 420 MobiDBLite consensus disorder prediction 48 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0299 Lcy-Chr13:3252208 Lcy2g0828 Lcy-Chr2:7480306 2.87E-34 dispersed
Lcy2g0828 Lcy-Chr2:7480306 Lcy4g2174 Lcy-Chr4:48293381 9.68E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19740 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0828 - - - 0.0