Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0828 ATGGGGGAAGTAGAGAATCGAGAGATGGATAATTTACCCCCGCCAAATGCTCAAACTGATAGTGCGGAACCGGGTAACGTGGGTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCAGAGCACCCTCATTTTCAGTCTCAGTCTCAGTCTCGGTGTCAATCGGAGTCATCGGCCGTGATGGTGGTGCAGAGTCAGTCGCAGCCAAAGTCCCCACAGCAGTTGATGGTTTTGCCCATTGGAACACAAGCGCCTCATTCTGTGAGAAAGCCAGATTCTCCGAAATCAAGATCAAGGTCTGTTGAAGTAAAAGATGCTACTCCAAAGAAGCAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGCGATGGTTGCAATTGTGCAAATTGCTATAACAATGTCGAGAATGAAGCTTCCAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTTCGACCAAAAATTGCTAGTAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGGTTGTAATGCTAGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGAAGAGAGACAAGCACTTTTCCATGGTGACCATGTCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGCCCAGAGTTATGCTTTGGCCCTACAGGGAAGGATCCCCCCCTCAATGGCATATCGCAATTTCATCAGGCTAATAATATAATGTCTTCTGGCACGTCTACATCATCTCCCCTCCCTGTTGCTCATGTTGGTAGCCCAGCAGCACCGGGGCCTTCAAAGTTTTCATACAGGTCCTTATTAGCAGACCTCATCCAGCCGAACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGTGAAGCTGCCAAGAATTTAGCAGGTAATGTGTTTTCAGAATTTTTATGGTATTGCAAGGATCTAAAATTTTGTCCAGGAAGTTGGAGAGCTGTGTGCAATATGATTGGATCAGCTGGCATTGTGAATACTGTACACAATGATTAA 1263 44.97 MGEVENREMDNLPPPNAQTDSAEPGNVGSSDVPAKKLARQLDFTGFGGAVLPEHPHFQSQSQSRCQSESSAVMVVQSQSQPKSPQQLMVLPIGTQAPHSVRKPDSPKSRSRSVEVKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVNNMAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPTGKDPPLNGISQFHQANNIMSSGTSTSSPLPVAHVGSPAAPGPSKFSYRSLLADLIQPNDLKELCSVLVVLSSEAAKNLAGNVFSEFLWYCKDLKFCPGSWRAVCNMIGSAGIVNTVHND 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7480306 7487068 - Maker00022268 Lcy2g0828 625593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0828 420 MobiDBLite consensus disorder prediction 55 92 - -
Lcy2g0828 420 MobiDBLite consensus disorder prediction 102 116 - -
Lcy2g0828 420 MobiDBLite consensus disorder prediction 1 36 - -
Lcy2g0828 420 PANTHER TESMIN/TSO1-RELATED 52 366 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lcy2g0828 420 ProSiteProfiles CRC domain profile. 122 246 IPR005172 -
Lcy2g0828 420 MobiDBLite consensus disorder prediction 12 26 - -
Lcy2g0828 420 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 243 IPR005172 -
Lcy2g0828 420 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 158 IPR005172 -
Lcy2g0828 420 SMART CXC_2 206 247 IPR033467 -
Lcy2g0828 420 SMART CXC_2 121 161 IPR033467 -
Lcy2g0828 420 MobiDBLite consensus disorder prediction 48 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0299 Lcy-Chr13:3252208 Lcy2g0828 Lcy-Chr2:7480306 2.87E-34 dispersed
Lcy2g0828 Lcy-Chr2:7480306 Lcy4g2174 Lcy-Chr4:48293381 9.68E-170 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g2174 . 90 519 CPP Transcription Factor Family AT2G20110 60.9 2.3e-138 490.0
Lcy2g0828 . 102 379 CPP Transcription Factor Family AT2G20110 65.9 1.2e-102 371.3
Lcy2g0828 . 113 380 CPP Transcription Factor Family AT5G25790 52.4 5.2e-75 279.3
Lcy4g2174 . 1 526 CPP Transcription Factor Family AT4G29000 56.1 1.6e-153 540.4
Lcy2g0828 . 81 377 CPP Transcription Factor Family AT4G29000 68.0 1.1e-112 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19740 None None None None Lcy TF