Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0847 ATGAGTAAGTTCAGTAGAATCATTCTGATAATTATGACTATTTTGCCTTTTGATGTCAATGCACAAGCACCTCCTCCACCAAAACCTGATCCTGGTATTCCACAGAACCTCAACATTGTTATTGGAATCCTCTCCATCATGGTCTCCATGGCCTTCATCTTTGTTGTTTATGTGAAATTCTGTCACCAGAATTTCCGTCTTCGTGGCGAACCGCGAGCTCATCTTGGGCTTGGACTTCTCAGATCAGACTCAAGGTTTTCTGGGGTTGATCAAAAGGTGATTGATTCACTTCCTTTCTTTAGATTCTCATCCCTCAGAGGATCAAGGAAAGGGCTGGAATGTGCAGTTTGTCTATCCAAATTCGAGGACATCGAAGTTCTTCGGTTGCTTCCGCAATGCAAGCATGCCTTTCACATTGGCTGCATTGATCATTGGCTTGAAAACCACTCGAGCTGTCCACTCTGTCGGTGTAGGATCAGCGTTGAGGACGTTGCATTTTTTACCAATTCCAACAGTATGAGACTCATGAGGAACAACAGCCAGCCAGAGCTGCCACAAGATCCAAACATGGAACTCTTTGTGCAGAGAGAGGAGGATCATCATAACTCTTCAAGGTCCAACATTGGAAGCAGCTTCGGGAAAAATGGAAAAGGCAATAAGGAAAAAGAAGTCTTGATCGAAAATGAAGGCGGCGAATGCGAAAGGGAGGAGCAGGTGCTCTTTCACAAGCATAAACACAAGATTCTTGTATCTGAGTTTGTTTTCGTGAACAGATGGAGCAACATGAGTGCTTCTGACCTCATGTTCTTGAACACAGAGATGCTTGGGGCCATGTCAAGCAATAGATTCTCTTCTTTGGACTCGGAAAACATTCATCGGTCGGCAACGAGAGAAACTGAGGACAGAAAGATTACACAGATTAAGGAAGAAATGGAAATGAAGAGATCATTTGAGAGGAGGATAAGCATAGCTGAGAAAAATAGCTTACTTTCAATCTCTGGTATTCCCTCTATATCAGACTCTAATGCAAGTACATCAAGGGCAACAAATCTTCATGAAAGAAGATCTATCTCAGACACTACTCCTTTCTCAAGATTTGGTAATTTCAATGAGAATGCAATAAGAGAAACTTCTGAGACTGAAGCTGATGCAAAAGATTACAGAATTAGGCAGATTTGGTTGCCAATAGCCAAAAGAACAGTCCAATGGTTTGCCAATAGGGAACAAAGATCAGTAGAATCGGAGCGAGTATCAGCTATTGACGAATCGATGATCCGGTTAAGTTTGTTTGCTGTTTGCCTCTTTTCTGTGTTCTTTTATGTTGAAGCTCAAGTTTCTTCTCAAGATGCTGAAAACAGTGCTTTTCAGCCAAGCCTTGGCTTTGTGATAGGGATTCTGGGAGTTATGTTTTTGTTGACATTTATTCTCCTTGTCTATGCAAAGTTCTGCCATAGAAGATCTTCTATTCGAGGGGATAATGTAAACCATCTGGGACAAATCAGATCAAGCTCTCGGTTATCCGGAATCGATAAGACGGTGATCGAGTCCCTTCCGTTCTTTAGATTCTCCACCCTCAAAGGGTCCAAAGAAGGGCTGGAGTGTGCAGTCTGTCTATCGAAATTCGAAGATATCGAAATCCTCCGGTTGTTGCCAAAGTGCAAGCACGCGTTTCATATCAACTGCATCGACCATTGGCTCGAAAAACATGCTAGCTGTCCTCTTTGCAGGCAAAGAGTTGGTTCTGAGGACTTGAAGCTCCTTACTGGCTCAAGCAGCATGAGGTTCTTATGGAGCAACCTATCAGAGCTGAAACAAGACTCAAACATAGAGCTCTTTGTGCAGAGAGAAGAAGAAGAAGAAGAACAACTCCATGGCTCTTCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAAGAGTGATAAAGAAGGGGAAATGTTGATACAAAAGGCCTGTGATGGAGATGAGAACATGAAGAACTTACACAGACACAATCACAAGATTATCTTATCCGACTTCGTCTTCATGAATCGATGGAGTAACGTCAGTTCCTCAGACCTGATGTTCTTGAACAAAGAGATGGTTGGTTCCATTTCAAGCAGTAGATTCTCTTCCTTGGAAACAGACATTGAGCAGTCAACGCTGTCAAGATCAGTGCAAAACGAAGAAATCTTGAAGATCAAAGAGGAGATGGACATAAAGAGATCATTTGAGAGCAAACTCAGCACAATAAGCCAAAGTAACTCAGTTCCAATTCTGGAATTTCCTTCCACATCAGAATCTGCTGCAAATCCATGTCAAACAGCAAGAATTACAAGCACAGAAGCGAGAAGATCAGTTTCAGAAATCACAGGCATATCAAGATTTGGTGGTGATCTGCATATGAAGTTCAACAGAAAAGTTGAAATTGGGGAATCTTCTGATCTGGGAAACAATGTCAAGCAAGAAAGAATGAGACAAATCTGGTACCCAATTGCCAAAAGAACAGTCCAATGGTTTGCCAACAGAGAAACAAGGTCTCAACCAGCTGAGAATAGACAGCAGACAGTAGAAACTGTATAG 2565 42.11 MSKFSRIILIIMTILPFDVNAQAPPPPKPDPGIPQNLNIVIGILSIMVSMAFIFVVYVKFCHQNFRLRGEPRAHLGLGLLRSDSRFSGVDQKVIDSLPFFRFSSLRGSRKGLECAVCLSKFEDIEVLRLLPQCKHAFHIGCIDHWLENHSSCPLCRCRISVEDVAFFTNSNSMRLMRNNSQPELPQDPNMELFVQREEDHHNSSRSNIGSSFGKNGKGNKEKEVLIENEGGECEREEQVLFHKHKHKILVSEFVFVNRWSNMSASDLMFLNTEMLGAMSSNRFSSLDSENIHRSATRETEDRKITQIKEEMEMKRSFERRISIAEKNSLLSISGIPSISDSNASTSRATNLHERRSISDTTPFSRFGNFNENAIRETSETEADAKDYRIRQIWLPIAKRTVQWFANREQRSVESERVSAIDESMIRLSLFAVCLFSVFFYVEAQVSSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRSSIRGDNVNHLGQIRSSSRLSGIDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHASCPLCRQRVGSEDLKLLTGSSSMRFLWSNLSELKQDSNIELFVQREEEEEEQLHGSSRFSIGRSFRKILKSDKEGEMLIQKACDGDENMKNLHRHNHKIILSDFVFMNRWSNVSSSDLMFLNKEMVGSISSSRFSSLETDIEQSTLSRSVQNEEILKIKEEMDIKRSFESKLSTISQSNSVPILEFPSTSESAANPCQTARITSTEARRSVSEITGISRFGGDLHMKFNRKVEIGESSDLGNNVKQERMRQIWYPIAKRTVQWFANRETRSQPAENRQQTVETV 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7651693 7655158 - Maker00022432 Lcy2g0847 625612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0847 854 CDD RING-H2_EL5-like 533 576 - -
Lcy2g0847 854 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lcy2g0847 854 FunFam RING-H2 finger protein ATL43 509 583 - -
Lcy2g0847 854 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 443 838 - -
Lcy2g0847 854 SUPERFAMILY RING/U-box 514 580 - -
Lcy2g0847 854 Pfam Ring finger domain 533 576 IPR001841 -
Lcy2g0847 854 Pfam Ring finger domain 113 156 IPR001841 -
Lcy2g0847 854 SMART ring_2 534 575 IPR001841 -
Lcy2g0847 854 SMART ring_2 114 155 IPR001841 -
Lcy2g0847 854 SUPERFAMILY RING/U-box 94 162 - -
Lcy2g0847 854 CDD RING-H2_EL5-like 113 156 - -
Lcy2g0847 854 MobiDBLite consensus disorder prediction 198 217 - -
Lcy2g0847 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
Lcy2g0847 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 583 IPR013083 -
Lcy2g0847 854 FunFam RING-H2 finger protein ATL43 89 163 - -
Lcy2g0847 854 Coils Coil 307 327 - -
Lcy2g0847 854 ProSiteProfiles Zinc finger RING-type profile. 534 576 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1751 Lcy-Chr11:41311134 Lcy2g0847 Lcy-Chr2:7651693 1.31E-06 dispersed
Lcy13g0728 Lcy-Chr13:10926394 Lcy2g0847 Lcy-Chr2:7651693 3.89E-12 dispersed
Lcy2g0339 Lcy-Chr2:2793457 Lcy2g0847 Lcy-Chr2:7651693 9.80E-44 dispersed
Lcy2g0847 Lcy-Chr2:7651693 Lcy8g1730 Lcy-Chr8:43798260 1.54E-22 dispersed
Lcy2g0847 Lcy-Chr2:7651693 Lcy2g0227 Lcy-Chr2:1795317 7.66E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0847 K10664 - csv:116402767 619.772