Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0847 | ATGAGTAAGTTCAGTAGAATCATTCTGATAATTATGACTATTTTGCCTTTTGATGTCAATGCACAAGCACCTCCTCCACCAAAACCTGATCCTGGTATTCCACAGAACCTCAACATTGTTATTGGAATCCTCTCCATCATGGTCTCCATGGCCTTCATCTTTGTTGTTTATGTGAAATTCTGTCACCAGAATTTCCGTCTTCGTGGCGAACCGCGAGCTCATCTTGGGCTTGGACTTCTCAGATCAGACTCAAGGTTTTCTGGGGTTGATCAAAAGGTGATTGATTCACTTCCTTTCTTTAGATTCTCATCCCTCAGAGGATCAAGGAAAGGGCTGGAATGTGCAGTTTGTCTATCCAAATTCGAGGACATCGAAGTTCTTCGGTTGCTTCCGCAATGCAAGCATGCCTTTCACATTGGCTGCATTGATCATTGGCTTGAAAACCACTCGAGCTGTCCACTCTGTCGGTGTAGGATCAGCGTTGAGGACGTTGCATTTTTTACCAATTCCAACAGTATGAGACTCATGAGGAACAACAGCCAGCCAGAGCTGCCACAAGATCCAAACATGGAACTCTTTGTGCAGAGAGAGGAGGATCATCATAACTCTTCAAGGTCCAACATTGGAAGCAGCTTCGGGAAAAATGGAAAAGGCAATAAGGAAAAAGAAGTCTTGATCGAAAATGAAGGCGGCGAATGCGAAAGGGAGGAGCAGGTGCTCTTTCACAAGCATAAACACAAGATTCTTGTATCTGAGTTTGTTTTCGTGAACAGATGGAGCAACATGAGTGCTTCTGACCTCATGTTCTTGAACACAGAGATGCTTGGGGCCATGTCAAGCAATAGATTCTCTTCTTTGGACTCGGAAAACATTCATCGGTCGGCAACGAGAGAAACTGAGGACAGAAAGATTACACAGATTAAGGAAGAAATGGAAATGAAGAGATCATTTGAGAGGAGGATAAGCATAGCTGAGAAAAATAGCTTACTTTCAATCTCTGGTATTCCCTCTATATCAGACTCTAATGCAAGTACATCAAGGGCAACAAATCTTCATGAAAGAAGATCTATCTCAGACACTACTCCTTTCTCAAGATTTGGTAATTTCAATGAGAATGCAATAAGAGAAACTTCTGAGACTGAAGCTGATGCAAAAGATTACAGAATTAGGCAGATTTGGTTGCCAATAGCCAAAAGAACAGTCCAATGGTTTGCCAATAGGGAACAAAGATCAGTAGAATCGGAGCGAGTATCAGCTATTGACGAATCGATGATCCGGTTAAGTTTGTTTGCTGTTTGCCTCTTTTCTGTGTTCTTTTATGTTGAAGCTCAAGTTTCTTCTCAAGATGCTGAAAACAGTGCTTTTCAGCCAAGCCTTGGCTTTGTGATAGGGATTCTGGGAGTTATGTTTTTGTTGACATTTATTCTCCTTGTCTATGCAAAGTTCTGCCATAGAAGATCTTCTATTCGAGGGGATAATGTAAACCATCTGGGACAAATCAGATCAAGCTCTCGGTTATCCGGAATCGATAAGACGGTGATCGAGTCCCTTCCGTTCTTTAGATTCTCCACCCTCAAAGGGTCCAAAGAAGGGCTGGAGTGTGCAGTCTGTCTATCGAAATTCGAAGATATCGAAATCCTCCGGTTGTTGCCAAAGTGCAAGCACGCGTTTCATATCAACTGCATCGACCATTGGCTCGAAAAACATGCTAGCTGTCCTCTTTGCAGGCAAAGAGTTGGTTCTGAGGACTTGAAGCTCCTTACTGGCTCAAGCAGCATGAGGTTCTTATGGAGCAACCTATCAGAGCTGAAACAAGACTCAAACATAGAGCTCTTTGTGCAGAGAGAAGAAGAAGAAGAAGAACAACTCCATGGCTCTTCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAAGAGTGATAAAGAAGGGGAAATGTTGATACAAAAGGCCTGTGATGGAGATGAGAACATGAAGAACTTACACAGACACAATCACAAGATTATCTTATCCGACTTCGTCTTCATGAATCGATGGAGTAACGTCAGTTCCTCAGACCTGATGTTCTTGAACAAAGAGATGGTTGGTTCCATTTCAAGCAGTAGATTCTCTTCCTTGGAAACAGACATTGAGCAGTCAACGCTGTCAAGATCAGTGCAAAACGAAGAAATCTTGAAGATCAAAGAGGAGATGGACATAAAGAGATCATTTGAGAGCAAACTCAGCACAATAAGCCAAAGTAACTCAGTTCCAATTCTGGAATTTCCTTCCACATCAGAATCTGCTGCAAATCCATGTCAAACAGCAAGAATTACAAGCACAGAAGCGAGAAGATCAGTTTCAGAAATCACAGGCATATCAAGATTTGGTGGTGATCTGCATATGAAGTTCAACAGAAAAGTTGAAATTGGGGAATCTTCTGATCTGGGAAACAATGTCAAGCAAGAAAGAATGAGACAAATCTGGTACCCAATTGCCAAAAGAACAGTCCAATGGTTTGCCAACAGAGAAACAAGGTCTCAACCAGCTGAGAATAGACAGCAGACAGTAGAAACTGTATAG | 2565 | 42.11 | MSKFSRIILIIMTILPFDVNAQAPPPPKPDPGIPQNLNIVIGILSIMVSMAFIFVVYVKFCHQNFRLRGEPRAHLGLGLLRSDSRFSGVDQKVIDSLPFFRFSSLRGSRKGLECAVCLSKFEDIEVLRLLPQCKHAFHIGCIDHWLENHSSCPLCRCRISVEDVAFFTNSNSMRLMRNNSQPELPQDPNMELFVQREEDHHNSSRSNIGSSFGKNGKGNKEKEVLIENEGGECEREEQVLFHKHKHKILVSEFVFVNRWSNMSASDLMFLNTEMLGAMSSNRFSSLDSENIHRSATRETEDRKITQIKEEMEMKRSFERRISIAEKNSLLSISGIPSISDSNASTSRATNLHERRSISDTTPFSRFGNFNENAIRETSETEADAKDYRIRQIWLPIAKRTVQWFANREQRSVESERVSAIDESMIRLSLFAVCLFSVFFYVEAQVSSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRSSIRGDNVNHLGQIRSSSRLSGIDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHASCPLCRQRVGSEDLKLLTGSSSMRFLWSNLSELKQDSNIELFVQREEEEEEQLHGSSRFSIGRSFRKILKSDKEGEMLIQKACDGDENMKNLHRHNHKIILSDFVFMNRWSNVSSSDLMFLNKEMVGSISSSRFSSLETDIEQSTLSRSVQNEEILKIKEEMDIKRSFESKLSTISQSNSVPILEFPSTSESAANPCQTARITSTEARRSVSEITGISRFGGDLHMKFNRKVEIGESSDLGNNVKQERMRQIWYPIAKRTVQWFANRETRSQPAENRQQTVETV | 854 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7651693 | 7655158 | - | Maker00022432 | Lcy2g0847 | 625612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0847 | 854 | CDD | RING-H2_EL5-like | 533 | 576 | - | - | |
Lcy2g0847 | 854 | ProSiteProfiles | Zinc finger RING-type profile. | 114 | 156 | IPR001841 | - | |
Lcy2g0847 | 854 | FunFam | RING-H2 finger protein ATL43 | 509 | 583 | - | - | |
Lcy2g0847 | 854 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 443 | 838 | - | - | |
Lcy2g0847 | 854 | SUPERFAMILY | RING/U-box | 514 | 580 | - | - | |
Lcy2g0847 | 854 | Pfam | Ring finger domain | 533 | 576 | IPR001841 | - | |
Lcy2g0847 | 854 | Pfam | Ring finger domain | 113 | 156 | IPR001841 | - | |
Lcy2g0847 | 854 | SMART | ring_2 | 534 | 575 | IPR001841 | - | |
Lcy2g0847 | 854 | SMART | ring_2 | 114 | 155 | IPR001841 | - | |
Lcy2g0847 | 854 | SUPERFAMILY | RING/U-box | 94 | 162 | - | - | |
Lcy2g0847 | 854 | CDD | RING-H2_EL5-like | 113 | 156 | - | - | |
Lcy2g0847 | 854 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
Lcy2g0847 | 854 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 164 | IPR013083 | - | |
Lcy2g0847 | 854 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 508 | 583 | IPR013083 | - | |
Lcy2g0847 | 854 | FunFam | RING-H2 finger protein ATL43 | 89 | 163 | - | - | |
Lcy2g0847 | 854 | Coils | Coil | 307 | 327 | - | - | |
Lcy2g0847 | 854 | ProSiteProfiles | Zinc finger RING-type profile. | 534 | 576 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1751 | Lcy-Chr11:41311134 | Lcy2g0847 | Lcy-Chr2:7651693 | 1.31E-06 | dispersed | |
Lcy13g0728 | Lcy-Chr13:10926394 | Lcy2g0847 | Lcy-Chr2:7651693 | 3.89E-12 | dispersed | |
Lcy2g0339 | Lcy-Chr2:2793457 | Lcy2g0847 | Lcy-Chr2:7651693 | 9.80E-44 | dispersed | |
Lcy2g0847 | Lcy-Chr2:7651693 | Lcy8g1730 | Lcy-Chr8:43798260 | 1.54E-22 | dispersed | |
Lcy2g0847 | Lcy-Chr2:7651693 | Lcy2g0227 | Lcy-Chr2:1795317 | 7.66E-24 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0847 | K10664 | - | csv:116402767 | 619.772 |