Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0853 | ATGGCTCAGCTTATTGAGAATGAGCCTAGAATTATAAACTCCTCGCCGTCGTCCACTTCCTCCTCGTCCTCGTCCTCGTCGTCGGTCGACTCCAACCGGAAACGGGCGAAGCGGCCCAGGGAAAACGGCAACAGCAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCATGGGGCAAATGGGTGTCCGAAATTCGTGAGCCCCGAAAGAAGAGTCGGATCTGGCTCGGCACTTTCTCTACTCCTGAAATGGCCGCACGTGCCCACGACGTGGCTGCTCTCACCATCAAGGGCAACTCCGCCATTCTCAACTTCCCCGAACTCGCCGATCAATTCCCCCGCCCGGCTTCCAACTCGCCTCGCGACGTTCAGGCAGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCCACCCCTTCTCCACCCTCCTCCTCGTCGTCGTCGTCGTCTTTGTGCCCGTCGACGCCGGAGGAATTGAGTGAAATCGTGGAGCTCCCGAGTTTAGGGACGAGTTACGAAACGGCCGAGTTGGGGAGCGAGTTCAATCCAGGAGGAGGGCCCAAGCCAAATACGGTTGTTTAG | 585 | 59.15 | MAQLIENEPRIINSSPSSTSSSSSSSSSVDSNRKRAKRPRENGNSNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTPSPPSSSSSSSSLCPSTPEELSEIVELPSLGTSYETAELGSEFNPGGGPKPNTVV | 194 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7718615 | 7719526 | + | Maker00021960 | Lcy2g0853 | 625618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0853 | 194 | MobiDBLite | consensus disorder prediction | 8 | 30 | - | - | |
Lcy2g0853 | 194 | PRINTS | Ethylene responsive element binding protein signature | 52 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0853 | 194 | PRINTS | Ethylene responsive element binding protein signature | 74 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0853 | 194 | ProSiteProfiles | AP2/ERF domain profile. | 51 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0853 | 194 | SMART | rav1_2 | 51 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0853 | 194 | MobiDBLite | consensus disorder prediction | 115 | 194 | - | - | |
Lcy2g0853 | 194 | MobiDBLite | consensus disorder prediction | 138 | 157 | - | - | |
Lcy2g0853 | 194 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Lcy2g0853 | 194 | FunFam | Ethylene-responsive transcription factor 2 | 50 | 109 | - | - | |
Lcy2g0853 | 194 | CDD | AP2 | 52 | 110 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0853 | 194 | Gene3D | AP2/ERF domain | 51 | 109 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0853 | 194 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 28 | 171 | IPR051032 | - | |
Lcy2g0853 | 194 | Pfam | AP2 domain | 50 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0853 | 194 | SUPERFAMILY | DNA-binding domain | 51 | 109 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0853 | Lcy-Chr2:7718615 | Lcy9g1625 | Lcy-Chr9:41392249 | 1.35E-55 | dispersed | |
Lcy6g2122 | Lcy-Chr6:44942944 | Lcy2g0853 | Lcy-Chr2:7718615 | 3.45E-42 | transposed | |
Lcy12g0669 | Lcy-Chr12:8285372 | Lcy2g0853 | Lcy-Chr2:7718615 | 2.48E-41 | wgd | |
Lcy2g0853 | Lcy-Chr2:7718615 | Lcy3g2138 | Lcy-Chr3:48321275 | 1.56E-51 | wgd | |
Lcy2g0853 | Lcy-Chr2:7718615 | Lcy4g2186 | Lcy-Chr4:48415335 | 1.03E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19742 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0853 | K09286 | - | csv:101219745 | 256.914 |