Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0853 ATGGCTCAGCTTATTGAGAATGAGCCTAGAATTATAAACTCCTCGCCGTCGTCCACTTCCTCCTCGTCCTCGTCCTCGTCGTCGGTCGACTCCAACCGGAAACGGGCGAAGCGGCCCAGGGAAAACGGCAACAGCAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCATGGGGCAAATGGGTGTCCGAAATTCGTGAGCCCCGAAAGAAGAGTCGGATCTGGCTCGGCACTTTCTCTACTCCTGAAATGGCCGCACGTGCCCACGACGTGGCTGCTCTCACCATCAAGGGCAACTCCGCCATTCTCAACTTCCCCGAACTCGCCGATCAATTCCCCCGCCCGGCTTCCAACTCGCCTCGCGACGTTCAGGCAGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCCACCCCTTCTCCACCCTCCTCCTCGTCGTCGTCGTCGTCTTTGTGCCCGTCGACGCCGGAGGAATTGAGTGAAATCGTGGAGCTCCCGAGTTTAGGGACGAGTTACGAAACGGCCGAGTTGGGGAGCGAGTTCAATCCAGGAGGAGGGCCCAAGCCAAATACGGTTGTTTAG 585 59.15 MAQLIENEPRIINSSPSSTSSSSSSSSSVDSNRKRAKRPRENGNSNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTPSPPSSSSSSSSLCPSTPEELSEIVELPSLGTSYETAELGSEFNPGGGPKPNTVV 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7718615 7719526 + Maker00021960 Lcy2g0853 625618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0853 194 MobiDBLite consensus disorder prediction 8 30 - -
Lcy2g0853 194 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0853 194 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0853 194 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0853 194 SMART rav1_2 51 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0853 194 MobiDBLite consensus disorder prediction 115 194 - -
Lcy2g0853 194 MobiDBLite consensus disorder prediction 138 157 - -
Lcy2g0853 194 MobiDBLite consensus disorder prediction 1 52 - -
Lcy2g0853 194 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Lcy2g0853 194 CDD AP2 52 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0853 194 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0853 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 171 IPR051032 -
Lcy2g0853 194 Pfam AP2 domain 50 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0853 194 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0853 Lcy-Chr2:7718615 Lcy9g1625 Lcy-Chr9:41392249 1.35E-55 dispersed
Lcy6g2122 Lcy-Chr6:44942944 Lcy2g0853 Lcy-Chr2:7718615 3.45E-42 transposed
Lcy12g0669 Lcy-Chr12:8285372 Lcy2g0853 Lcy-Chr2:7718615 2.48E-41 wgd
Lcy2g0853 Lcy-Chr2:7718615 Lcy3g2138 Lcy-Chr3:48321275 1.56E-51 wgd
Lcy2g0853 Lcy-Chr2:7718615 Lcy4g2186 Lcy-Chr4:48415335 1.03E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19742 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0853 K09286 - csv:101219745 256.914