Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0867 ATGACGTCGTCTCTTTCTTCTCTTGTCTTTTTTCTGGAAACCATTTCCTTCTTCCTCCTCCTCCTCCTCTGTTCCCACAATGTCAATTCCCAGCTCTACCAACAAGAACACTCTGTTCTTCTCCGACTCAACCAGTTCTGGCAAAACCAAGCACCGATCGCCCATTGGCGCTCCGCAAATGATTCCCATTGTACGTGGCCGGAGATTCAGTGCACCAACAACTCTGTCACTGCTCTGCTTTTCCAAAACTACAATTTGAACGGAACCTTCCCCCCTTTCATTTGCAATCTCAAGAATCTCACCCGCCTTGATCTTCTGGGCAATTACATCGCCGGTGGCTTTCCGACAGCTCTTTACAATTGTTCGAGGCTTAATTACCTCGACCTCTCGGGGAATTACTTCGTCGGCCCGATTCCCGATGACGTTGATCGATTGTCTCGCCTCCAGTTTCTCTCTCTCGGCAACAACGGCTTCTCCGGCGATATTCCGACATCCATTTCTCGGCTGTCGGAACTCCGGTTCCTTCACCTTTATCAGAATCGATTCAATGGGACTTACCCATCTGAAATCGGCAACTTGTCGAATCTGGAAGAATTGCTGACGGCTTACAATTCAAATCTGTTACCCGAAGCATTGCCTCCCAGTTTCGCCCAATTGAAGAAATTGAAGTATATATGGATGTCAGGCGCGAACCTAGTCGGTGAAATTCCTGATTGGATCGGAAATTTGACCGCTCTAGAGAAATTGGATTTGTCGAGGAACAATCTGACTGGGAAAATCCCTAGCAGTTTGTTTACGTTGGAGAATCTTACTTACGTGTACCTGTTCAAGAACAGTCTATCAGGAGAAATTCCTCAGCGGATTGAATCTAAAAAGATCAAGGAATACGACCTATCGGAGAATAATTTGACCGGAGAAATTCCGGCGGCTATCGGCGATCTTCAGCAATTGACGGCTCTAGGTCTCTCTTCAAATCGCTTATATGGAGAAATCCCAGAAAGCATCGGACGTCTCCCATTGTTAACAGACGTCAAATTGTTCAACAACAATTTAAACGGCACAGTGCCGGCAGATTTCGGCCGGAATTTGATTCTCGAGAAATTTGAGGTGAACGAAAATAAGCTCACCGGAAGCTTGCCGGAGCACTTATGCTCCGGCAGTAAGCTCATAGGATTGACTGCTTTTGAGAATAATCTTAGTGGGGAGTTGCCAGAATCGCTCGGGAATTGTAGTACCTTGATGATTATTGATGTTCATAAGAATAATTTTTCTGGAAAAATTCCGGCCGGTCTGTGGACGTATCCGAGTTTGATTTATGCAGTGATGAGCGACAATTCTTTCACGGGTGAATTCCCTGAGAGAGTCTCGAAGAATCTTCAGAGATTGGAAATCAACAACAACAAATTTTCAGGGAAAATTCCATCTGGGTTATCTTCATTGTGGAATTTGACTGAGTTTGAAGCAAGCAATAATTTGTTGACAGGACAAATCCCTGAAGAACTCACTGCTCTTTCAAAGTTGAACAAGCTTTTCCTTGATGGAAATCAACTCATCGGAGAGCTTCCACGGAATATCATTTCGTGGAGATCACTGAACAATCTTAACCTCCGTCGAAATCGTCTTTCAGGTGAAATTCCCGACCAACTTGGTGGTTTACCAAGCCTTACTGATCTTGATCTCTCGGAGAATCGACTTTCTGGGACGATTCCAACTCAACTAGGAAATTTGGAGCTGAATTTCCTCAACCTCTCTTCGAATTTTCTGTCGGGGACAATCCCAATTGCGTTAGAAAACGCAATCTATGCAAGAAGCTTTTTGAACAATCCGAGTCTTTGTTCAAACAACGCAGTTCTGAAAATGGACAGCTGCAGTTTGAGAACTCAAAATTCGAGAAAGATTTCATCACAACATCTTGCTCTGATCGTAAGCTTGGGAATAATATTATCCATACTCTTTGTACTCTCTGCTCTGTACATAATCAAAATCTACAAGAATACTGGAAACAGAGAAGATATCGAATGGAAACTGACCTCATTTCAGAGGCTGAATTTCTCAGAGACAAATCTTTTATCTGGACTATCAGAAAACAACGTGATCGGAAGGGGTGGATCTGGAAAAGTTTATCGAATCCCAGTGAATAATTTGGGCGATATAGTGGCCGTGAAGAGAATATGGAACAACAAAAAGTCAGATCACAAGCTGGAGAAAGAATTCATGGCGGAAGTAAAGATTCTCAGTTCGATTCGACATAACAACATTATCAAACTCCTCTGCTGCGTTTCTTGTGAAACGTCACGCCTTCTCGTTTATGAGTATATGGAGAGGCAAAGCCTTGACAAATGGCTGCACAAGAGGAACTCGCCGCCGAGAATTACAGGGTCGGACTCTGTTTTTGGTGTCGCCCTTGATTGGCCAACGAGATTTCAAATTGCAGTGGGGGCGGCACAGGGCCTCGGCTATATGCACCATGAATGTTCACCTCCGGTAATTCACAGAGACTTGAAGTCCAGCAATATCTTACTGGATTCGGAATTCAATGCCAAAATAGCAGATTTTGGCTTGGCCAAGTTGCTGGTAAAGCAAGGGGAACCAGCTTCAGTCTCGGCCGTCGCCGGCTCCTTCGGATACATAGCTCCAGGTAAGAGACTTTCCAGTTCCAACCCATCAAAGAATTTAGGCATAAAACTAAAAGCTTGTTGTTTTGTATGTGCAGAGTATGCTCAAACACCAAGAATTAACGAGAAGATCGACGTGTTTAGTTATGGGGTTATTCTTCTGGAGTTGGTGACCGGAAAGGAAGCTCTCGAGGGCGATGAAGAGTCGTCTCTGGCGGAGTGGGCTTGGGAGTACATTCAACAGGGCAAGGCAATAGCCGATGCGTTGGATGAGGATGTGAAGGAGCCACATTATGTTGATGAAATGTGCAGTGTTTTCAAACTTGGAGTGATTTGCACTTCCAGTTCGCCGACCAGCCGGCCAACCATGAACCAGGCTCTGGAAATCTTGATCAGCAGTCGGACCTCAACACTCCAAAACCATGGAGATAAAAAAACCTAG 3057 44.68 MTSSLSSLVFFLETISFFLLLLLCSHNVNSQLYQQEHSVLLRLNQFWQNQAPIAHWRSANDSHCTWPEIQCTNNSVTALLFQNYNLNGTFPPFICNLKNLTRLDLLGNYIAGGFPTALYNCSRLNYLDLSGNYFVGPIPDDVDRLSRLQFLSLGNNGFSGDIPTSISRLSELRFLHLYQNRFNGTYPSEIGNLSNLEELLTAYNSNLLPEALPPSFAQLKKLKYIWMSGANLVGEIPDWIGNLTALEKLDLSRNNLTGKIPSSLFTLENLTYVYLFKNSLSGEIPQRIESKKIKEYDLSENNLTGEIPAAIGDLQQLTALGLSSNRLYGEIPESIGRLPLLTDVKLFNNNLNGTVPADFGRNLILEKFEVNENKLTGSLPEHLCSGSKLIGLTAFENNLSGELPESLGNCSTLMIIDVHKNNFSGKIPAGLWTYPSLIYAVMSDNSFTGEFPERVSKNLQRLEINNNKFSGKIPSGLSSLWNLTEFEASNNLLTGQIPEELTALSKLNKLFLDGNQLIGELPRNIISWRSLNNLNLRRNRLSGEIPDQLGGLPSLTDLDLSENRLSGTIPTQLGNLELNFLNLSSNFLSGTIPIALENAIYARSFLNNPSLCSNNAVLKMDSCSLRTQNSRKISSQHLALIVSLGIILSILFVLSALYIIKIYKNTGNREDIEWKLTSFQRLNFSETNLLSGLSENNVIGRGGSGKVYRIPVNNLGDIVAVKRIWNNKKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCETSRLLVYEYMERQSLDKWLHKRNSPPRITGSDSVFGVALDWPTRFQIAVGAAQGLGYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKLLVKQGEPASVSAVAGSFGYIAPGKRLSSSNPSKNLGIKLKACCFVCAEYAQTPRINEKIDVFSYGVILLELVTGKEALEGDEESSLAEWAWEYIQQGKAIADALDEDVKEPHYVDEMCSVFKLGVICTSSSPTSRPTMNQALEILISSRTSTLQNHGDKKT 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7877605 7880661 + Maker00021954 Lcy2g0867 625632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0867 1018 Gene3D Ribonuclease Inhibitor 386 497 IPR032675 -
Lcy2g0867 1018 Gene3D Ribonuclease Inhibitor 498 624 IPR032675 -
Lcy2g0867 1018 FunFam Protein kinase superfamily protein 773 857 - -
Lcy2g0867 1018 Gene3D Phosphorylase Kinase; domain 1 675 772 - -
Lcy2g0867 1018 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 289 - -
Lcy2g0867 1018 PRINTS Leucine-rich repeat signature 246 259 - -
Lcy2g0867 1018 PRINTS Leucine-rich repeat signature 552 565 - -
Lcy2g0867 1018 SUPERFAMILY RNI-like 297 626 - -
Lcy2g0867 1018 SMART LRR_typ_2 552 576 IPR003591 -
Lcy2g0867 1018 SMART LRR_typ_2 243 267 IPR003591 -
Lcy2g0867 1018 SMART LRR_typ_2 145 169 IPR003591 -
Lcy2g0867 1018 SMART LRR_typ_2 504 528 IPR003591 -
Lcy2g0867 1018 SMART LRR_typ_2 314 338 IPR003591 -
Lcy2g0867 1018 FunFam Receptor-like protein kinase HSL1 isoform A 33 184 - -
Lcy2g0867 1018 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524(InterPro)
Lcy2g0867 1018 ProSiteProfiles Protein kinase domain profile. 693 1010 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0867 1018 SMART serkin_6 693 1007 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0867 1018 Gene3D Transferase(Phosphotransferase) domain 1 773 1017 - -
Lcy2g0867 1018 Pfam Protein kinase domain 695 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0867 1018 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 368 1000 IPR051716 -
Lcy2g0867 1018 FunFam Receptor-like protein kinase HSL1 673 772 - -
Lcy2g0867 1018 Pfam Leucine rich repeat 529 586 IPR001611 GO:0005515(InterPro)
Lcy2g0867 1018 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515(InterPro)
Lcy2g0867 1018 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 625 - -
Lcy2g0867 1018 Pfam Leucine Rich Repeat 317 338 IPR001611 GO:0005515(InterPro)
Lcy2g0867 1018 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Lcy2g0867 1018 Pfam Leucine Rich Repeat 458 480 IPR001611 GO:0005515(InterPro)
Lcy2g0867 1018 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Lcy2g0867 1018 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Lcy2g0867 1018 SUPERFAMILY Protein kinase-like (PK-like) 685 1002 IPR011009 -
Lcy2g0867 1018 SUPERFAMILY RNI-like 66 384 - -
Lcy2g0867 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0867 1018 Gene3D Ribonuclease Inhibitor 292 385 IPR032675 -
Lcy2g0867 1018 Gene3D Ribonuclease Inhibitor 33 185 IPR032675 -
Lcy2g0867 1018 Gene3D Ribonuclease Inhibitor 186 291 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0867 Lcy-Chr2:7877605 Lcy4g0505 Lcy-Chr4:6134983 4.24E-71 dispersed
Lcy2g0867 Lcy-Chr2:7877605 Lcy2g0868 Lcy-Chr2:7887275 5.37E-284 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65730 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0867 - - - 0.0