Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0868 ATGACGTCGTCTCTTTCTTCTCTTCTCTTTTTTCTGGAAACCATTTCCTTCTTCCTCCTCCTCCTCCTCTGTTCCCACCATGTCAATTCCCAGCTCTACCAACAAGAACACTCTGTTCTTCTCCGACTCAACCACTTCTGGCAAAACCAAGCACCGATCACCCATTGGCGCTCCTCAAATGATTCCCATTGTACGTGGCCGGAGATTCAGTGCACCAACAACTCTGTCACTGCTCTGCTTTTCCAAAACTACAATTTGAACGGAACCTTCCCCCCTTTCATTTGCGATCTCAAGAATCTCACCTACCTTGATCTTCAGCTCAATTTCATCTCCGACGGTTTTCCAACCACGCTTTACAATTGCTCGAAGCTTAATTACCTCGACCTCTCGCAGAATTACTTCGTTGGCCCGATTCCCGATGACGTTGACCGCTTGTCCCGCCTCCAGTTTCTTAATCTCGGCGGCAACAGCTTCTCCGGCGAGATTCCGGCATCCATTTCTCGGTTGTCGGAACTCCGGTCCCTTTACCTTTTTGTGAATCAATTCAATGGGACTTACCCATCTGAAATAGGTAACTTGTCGAATCTGGAAGAATTGCTGACGGCTTACAATTCAAATCTGCTACCGGCAGCATTGCCTTCCAGTTTCGCTCAATTGAAGAAATTGAAGTATATATGGATGTCAGGCGCGAACCTAGTCGGTGAAATTCCTGATTGGATCGGAAATTTGACCGCACTCGAGAAATTGGATTTGTCGAGGAACAATCTGACTGGGAAAATCCCTAGCAGTTTGTTTACGTTGGAGAATCTTACTTACATGTACCTGTTCAAGAACAATCTATCAGGAGAAATTCCTCAGCGGATTGAATCTAAAAAGATCAAGGAATACGACCTATCGGATAATCATTTGACCGGAGAAATTCCAGCGGCTATCGGCGATCTTCAGCAATTGACGGCTTTACTTCTGTCTTCAAATCGCTTATACGGAGAAATCCCAGAAAGCATCGGCCGACTTCCATTCTTAACAGACGTGAGACTATTCGACAACAATTTAAACGGCACACTGCCGCCAGATTTCGGCCGAAATTTGATTCTCGAAAGTTTCCAGGTGAACAGCAATAAGCTCACCGGAAGCTTGCCGGAGCACTTGTGCTCCGGCGGTAAGCTCTTAGGAGTGACTGCTTTCGAGAATAATCTTAGTGGGGAATTGCCAGAATCGCTTGGGAATTGCGATAGCTTGATGATGGTTGACGTTCATAAGAACAACTTTTCTGGGAAAATTCCGGTCGGTCTTTGGACGTCTCTGAATTTGACTTTTGTAGTGATGAGCAACAATTCTTTCACGGGTGAACTCCCAGAGAAATTCTCGAAAAATCTTGCAAGATTGGAAATCAGCAACAACAAATTTTCAGGGAAAATTCCATCTGGGTTATCTTCATTGTGGAATTTGACTGAGTTTGAAGCAAACAACAATTTGTTAACCGGACAAATTCCTGAAGAACTCACTGCTCTTTCAAAGTTGAACACGCTGTTACTTGGTGGAAATCAACTCACTGGAGAGCTTCCACGGAATATCATTTCATGGAGATCGTTGAACAATCTTAACCTCAGGCAAAATCGTCTTTCCGGTGAAATTCCCGACCAACTTGGTGGTTTACCAAGCCTTACTGATCTTGATCTCTCAGATAATCAACTTTCTGGGACGATTCCAACTCAACTAGGAAATTTGGAGCTGAATTTCCTCAACCTCTCCTCGAATTTTCTGTCTGGGACAATTCCAATTGCGTTTGAAAACGCAATCTATGCAAGAAGCTTTTTGAACAATCCGAGTCTTTGTTCAAACAACGCAGTTCTGAACATGGACAGCTGCAGTTTGAGAACTCAGAATTCGAGAAAGATTTCATCACAACATCTTGCTCTGATCGTAAGCTTGGGAATAATAGTATGCATACTCTTCATACTTTCTGCTTTGTACATAATCAAAATCTACCGGAAGACCGGAATCAGAGGAGATATTGAATGGAAACTGACCTCATTTCAGAGGTTGAATTTCTCGGAGACAAATCTTTTATCTGGGCTATTAGAAAACAACGTGATCGGAAGCGGTGGATCTGGGAAAGTTTATCGTATCCCAGTGAATAATTTGGGTGATACAGTGGCCGTGAAGAGAATATGGAACAACAGAAAGTCAGATCACAAGCTGGAGAAAGAATTCATGGCGGAAGTGAAGATTCTCAGTTCAATTCGACATAACAACATAATCAAACTCCTCTGCTGCGTTTCTTGTGAAACTTCACGCCTTCTCGTTTATGAGTATATGGAGAGGCAAAGCCTTGACAAATGGCTGCACAAGAGGAACTCGCCGCCGAGAATTACAGGGTCGGACTCTGTTTGTGGTGTCGCCCTTGATTGGCCAACGAGATTTCAAATTGCAGTGGGGGCGGCACAGGGCCTCTGTTATATGCACCATGAATGTTCACCTCCGGTAATTCACAGAGACTTGAAGTCCAGCAATATCTTACTAGATTCGGAATTCAATGCTAAAATAGCAGATTTTGGCTTGGCCAAGTTGCTGGTAAAGCAAGGGGAACCAGCTTCAGTCTCGGCCGTTGCCGGCTCTTTCGGATACATAGCTCCAGAGTATGCTCAGACACCAAGAATTAACGAGAAGATTGACGTATTTAGCTTTGGAGTTATTCTTCTGGAGTTGACGACGGGAAAGGAAGCTCTCAACGGCGACGAAAACTCGTCTCTAGCCGAGTGGGCTTGGGAGTACATTCAACAAGGCAAGCCACCAGCCGATGCATTGGATGAAGATGTGAAGGAGGCACAGTATCTTGATGAAATGTGCAGTGTTTTCAAACTTGGGGTGATCTGCACTTCCAGTTTGCCGACGAGTCGGCCGACCATGAACCAGGCTTTGGAAATTTTGATCCGCAGCCGAACCTCGGAACCCCAAAACCATGGAGACAAAAAGACTCAGATCGTGAAAGTTCTCTCCAATGGTCTCTGTTTTGACGATCAAGATTCGCCGTCTAAGGTGGAGACTGGAGAGGACCCTGCACTCCAGCCACTGCTCGGAGCAGAAATGGCTATGGAGTTGACGGATCGCCTTGGTTTGAATGACAATCGCTGTCGTGTATTTTAG 3147 45.0 MTSSLSSLLFFLETISFFLLLLLCSHHVNSQLYQQEHSVLLRLNHFWQNQAPITHWRSSNDSHCTWPEIQCTNNSVTALLFQNYNLNGTFPPFICDLKNLTYLDLQLNFISDGFPTTLYNCSKLNYLDLSQNYFVGPIPDDVDRLSRLQFLNLGGNSFSGEIPASISRLSELRSLYLFVNQFNGTYPSEIGNLSNLEELLTAYNSNLLPAALPSSFAQLKKLKYIWMSGANLVGEIPDWIGNLTALEKLDLSRNNLTGKIPSSLFTLENLTYMYLFKNNLSGEIPQRIESKKIKEYDLSDNHLTGEIPAAIGDLQQLTALLLSSNRLYGEIPESIGRLPFLTDVRLFDNNLNGTLPPDFGRNLILESFQVNSNKLTGSLPEHLCSGGKLLGVTAFENNLSGELPESLGNCDSLMMVDVHKNNFSGKIPVGLWTSLNLTFVVMSNNSFTGELPEKFSKNLARLEISNNKFSGKIPSGLSSLWNLTEFEANNNLLTGQIPEELTALSKLNTLLLGGNQLTGELPRNIISWRSLNNLNLRQNRLSGEIPDQLGGLPSLTDLDLSDNQLSGTIPTQLGNLELNFLNLSSNFLSGTIPIAFENAIYARSFLNNPSLCSNNAVLNMDSCSLRTQNSRKISSQHLALIVSLGIIVCILFILSALYIIKIYRKTGIRGDIEWKLTSFQRLNFSETNLLSGLLENNVIGSGGSGKVYRIPVNNLGDTVAVKRIWNNRKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCETSRLLVYEYMERQSLDKWLHKRNSPPRITGSDSVCGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKLLVKQGEPASVSAVAGSFGYIAPEYAQTPRINEKIDVFSFGVILLELTTGKEALNGDENSSLAEWAWEYIQQGKPPADALDEDVKEAQYLDEMCSVFKLGVICTSSLPTSRPTMNQALEILIRSRTSEPQNHGDKKTQIVKVLSNGLCFDDQDSPSKVETGEDPALQPLLGAEMAMELTDRLGLNDNRCRVF 1048
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7887275 7890564 + Maker00022196 Lcy2g0868 625633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0868 1048 FunFam Kinase family with leucine-rich repeat domain-containing protein 773 995 - -
Lcy2g0868 1048 SUPERFAMILY Protein kinase-like (PK-like) 686 977 IPR011009 -
Lcy2g0868 1048 SUPERFAMILY RNI-like 65 386 - -
Lcy2g0868 1048 Gene3D Ribonuclease Inhibitor 185 291 IPR032675 -
Lcy2g0868 1048 Pfam Leucine Rich Repeat 530 552 IPR001611 GO:0005515(InterPro)
Lcy2g0868 1048 Pfam Leucine Rich Repeat 554 576 IPR001611 GO:0005515(InterPro)
Lcy2g0868 1048 Pfam Leucine Rich Repeat 436 457 IPR001611 GO:0005515(InterPro)
Lcy2g0868 1048 Pfam Leucine Rich Repeat 458 480 IPR001611 GO:0005515(InterPro)
Lcy2g0868 1048 Pfam Leucine Rich Repeat 578 598 IPR001611 GO:0005515(InterPro)
Lcy2g0868 1048 Pfam Leucine Rich Repeat 317 338 IPR001611 GO:0005515(InterPro)
Lcy2g0868 1048 Pfam Protein kinase domain 696 975 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0868 1048 PRINTS Leucine-rich repeat signature 246 259 - -
Lcy2g0868 1048 PRINTS Leucine-rich repeat signature 552 565 - -
Lcy2g0868 1048 SUPERFAMILY RNI-like 293 645 - -
Lcy2g0868 1048 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524(InterPro)
Lcy2g0868 1048 Gene3D Ribonuclease Inhibitor 529 614 IPR032675 -
Lcy2g0868 1048 Gene3D Ribonuclease Inhibitor 458 528 IPR032675 -
Lcy2g0868 1048 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 436 977 IPR051564 GO:0016020(PANTHER)
Lcy2g0868 1048 FunFam Receptor-like protein kinase HSL1 673 772 - -
Lcy2g0868 1048 ProSiteProfiles Protein kinase domain profile. 693 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0868 1048 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515(InterPro)
Lcy2g0868 1048 Pfam Leucine rich repeat 237 280 IPR001611 GO:0005515(InterPro)
Lcy2g0868 1048 Gene3D Ribonuclease Inhibitor 33 184 IPR032675 -
Lcy2g0868 1048 FunFam Receptor-like protein kinase HSL1 isoform A 33 184 - -
Lcy2g0868 1048 Gene3D Phosphorylase Kinase; domain 1 675 772 - -
Lcy2g0868 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0868 1048 SMART serkin_6 693 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0868 1048 Gene3D Transferase(Phosphotransferase) domain 1 773 1003 - -
Lcy2g0868 1048 SMART LRR_typ_2 97 121 IPR003591 -
Lcy2g0868 1048 SMART LRR_typ_2 145 169 IPR003591 -
Lcy2g0868 1048 SMART LRR_typ_2 243 267 IPR003591 -
Lcy2g0868 1048 SMART LRR_typ_2 314 338 IPR003591 -
Lcy2g0868 1048 SMART LRR_typ_2 504 528 IPR003591 -
Lcy2g0868 1048 SMART LRR_typ_2 552 576 IPR003591 -
Lcy2g0868 1048 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 289 - -
Lcy2g0868 1048 Gene3D Ribonuclease Inhibitor 292 457 IPR032675 -
Lcy2g0868 1048 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1436 Lcy-Chr13:32853718 Lcy2g0868 Lcy-Chr2:7887275 7.39E-146 dispersed
Lcy2g0868 Lcy-Chr2:7887275 Lcy4g0505 Lcy-Chr4:6134983 1.52E-78 dispersed
Lcy2g0867 Lcy-Chr2:7877605 Lcy2g0868 Lcy-Chr2:7887275 5.37E-284 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65731 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0868 - - - 0.0