Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0871 ATGGGGAGAGCGACGAGATGGCTGAAGAACTTGTTTGGGATTAAGAAAGAAAAAGAACCCACCAGAGAAAATTCCAACTACGGCGTCAAGAAGGATAAAAAACCCACTTCAAATTTCGCCGGAGACGCTGAGCTCTGCAACAATCCGGCCACAATACCGCCGAATTTATCGGCGGCGGAGGCGGCTTGGCTGAAATCGTTCTACTCGGAAACAGAGAAGGAACAGAGCAAGCACGCAATAGCAGTGGCTGCAGCCACAGCTGCCGCCGCCGACGCGGCGGTCGCTGCAGCACAAGCCGCCGTGGCGGTGGTTCGGCTGACCAGCCACGGAAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCTCTGTCAAGATTCAAACTTGCTTCAGAGGGTATCTGGCGAGAAAAGCACTGCGAGCACTGAAAGGACTGGTGAAATTACAGGCGCTTGTGAGAGGATATTTAGTTCGCAAACAAGCAACAGCAACTCTTCACAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGCAGATTCATAAACGACGAAGCAATTAATAACAACAGACTTGAAATCCGAGCCCGAAAATCCACGGAGAGATTTGACGACACAAAAAGCGAACACACAGCTTCAGTACACAGCAGAAGGCTTTCGGCTTCATTAGACAACACGGCATTCACAGCACTTGAAGAAAGCCCCAAAATCGTGGAAATGGACACCGGCCGGCCGAAATCCTGGTCTCGCCGGACGAACACGTCGGCGTCGGAATTCGGCGACGACCCATTTCACCAAACGCTGTCGTCTCCACTCCCCTGCCGGACTCCGTCGCGCTTGCAGATCCCAGATTGCCGGAATTTCCACGACTCCGACTGGGGTCTCACCGGCGACGAGTGCCGTTTGATCTCGACGGCGCAGAGCACGCCACGATTCGTGAGCTCCGGCGGAACCAACGGCCCTCCGACGCCGGCGAAGAGCATGTGTGCTGATAATTTCTTCAGAGGGTACCTGAATTTCCCGAATTACATGGCGAGTACTCAATCGTTCAAGGCGAAATTGAGGTCTCACAGTGCTCCGAAACAGAGGCCGGAGCCGGGGTCGAAGAAGAGGCTGTCGTTGAACGAATTGATGGAATCGAGAAGCAGCCTTAGCGGAGTTCGAATGCAGAGGTCTTGTTCGCATGTTCAAGAAGCCATTAATTTCAAGAACGCTGTGATGAGCAAACTGGACCGGCCGTCGGAATTCAACAACTTGCAGAGAAGATTATGA 1290 53.33 MGRATRWLKNLFGIKKEKEPTRENSNYGVKKDKKPTSNFAGDAELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDEAINNNRLEIRARKSTERFDDTKSEHTASVHSRRLSASLDNTAFTALEESPKIVEMDTGRPKSWSRRTNTSASEFGDDPFHQTLSSPLPCRTPSRLQIPDCRNFHDSDWGLTGDECRLISTAQSTPRFVSSGGTNGPPTPAKSMCADNFFRGYLNFPNYMASTQSFKAKLRSHSAPKQRPEPGSKKRLSLNELMESRSSLSGVRMQRSCSHVQEAINFKNAVMSKLDRPSEFNNLQRRL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7948711 7950785 + Maker00022249 Lcy2g0871 625636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0871 429 PANTHER IQ-DOMAIN 5-RELATED 6 396 - -
Lcy2g0871 429 ProSiteProfiles IQ motif profile. 144 171 - -
Lcy2g0871 429 MobiDBLite consensus disorder prediction 246 278 - -
Lcy2g0871 429 Pfam Protein of unknown function (DUF4005) 325 391 IPR025064 -
Lcy2g0871 429 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Lcy2g0871 429 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Lcy2g0871 429 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Lcy2g0871 429 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Lcy2g0871 429 Gene3D - 117 168 - -
Lcy2g0871 429 ProSiteProfiles IQ motif profile. 120 148 - -
Lcy2g0871 429 MobiDBLite consensus disorder prediction 253 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0871 Lcy-Chr2:7948711 Lcy4g1959 Lcy-Chr4:45950960 1.12E-09 dispersed
Lcy12g0677 Lcy-Chr12:8459747 Lcy2g0871 Lcy-Chr2:7948711 1.52E-52 wgd
Lcy2g0871 Lcy-Chr2:7948711 Lcy3g2162 Lcy-Chr3:48528838 3.49E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0871 - - - 0.0