Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0871 ATGGGGAGAGCGACGAGATGGCTGAAGAACTTGTTTGGGATTAAGAAAGAAAAAGAACCCACCAGAGAAAATTCCAACTACGGCGTCAAGAAGGATAAAAAACCCACTTCAAATTTCGCCGGAGACGCTGAGCTCTGCAACAATCCGGCCACAATACCGCCGAATTTATCGGCGGCGGAGGCGGCTTGGCTGAAATCGTTCTACTCGGAAACAGAGAAGGAACAGAGCAAGCACGCAATAGCAGTGGCTGCAGCCACAGCTGCCGCCGCCGACGCGGCGGTCGCTGCAGCACAAGCCGCCGTGGCGGTGGTTCGGCTGACCAGCCACGGAAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCTCTGTCAAGATTCAAACTTGCTTCAGAGGGTATCTGGCGAGAAAAGCACTGCGAGCACTGAAAGGACTGGTGAAATTACAGGCGCTTGTGAGAGGATATTTAGTTCGCAAACAAGCAACAGCAACTCTTCACAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGCAGATTCATAAACGACGAAGCAATTAATAACAACAGACTTGAAATCCGAGCCCGAAAATCCACGGAGAGATTTGACGACACAAAAAGCGAACACACAGCTTCAGTACACAGCAGAAGGCTTTCGGCTTCATTAGACAACACGGCATTCACAGCACTTGAAGAAAGCCCCAAAATCGTGGAAATGGACACCGGCCGGCCGAAATCCTGGTCTCGCCGGACGAACACGTCGGCGTCGGAATTCGGCGACGACCCATTTCACCAAACGCTGTCGTCTCCACTCCCCTGCCGGACTCCGTCGCGCTTGCAGATCCCAGATTGCCGGAATTTCCACGACTCCGACTGGGGTCTCACCGGCGACGAGTGCCGTTTGATCTCGACGGCGCAGAGCACGCCACGATTCGTGAGCTCCGGCGGAACCAACGGCCCTCCGACGCCGGCGAAGAGCATGTGTGCTGATAATTTCTTCAGAGGGTACCTGAATTTCCCGAATTACATGGCGAGTACTCAATCGTTCAAGGCGAAATTGAGGTCTCACAGTGCTCCGAAACAGAGGCCGGAGCCGGGGTCGAAGAAGAGGCTGTCGTTGAACGAATTGATGGAATCGAGAAGCAGCCTTAGCGGAGTTCGAATGCAGAGGTCTTGTTCGCATGTTCAAGAAGCCATTAATTTCAAGAACGCTGTGATGAGCAAACTGGACCGGCCGTCGGAATTCAACAACTTGCAGAGAAGATTATGA 1290 53.33 MGRATRWLKNLFGIKKEKEPTRENSNYGVKKDKKPTSNFAGDAELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDEAINNNRLEIRARKSTERFDDTKSEHTASVHSRRLSASLDNTAFTALEESPKIVEMDTGRPKSWSRRTNTSASEFGDDPFHQTLSSPLPCRTPSRLQIPDCRNFHDSDWGLTGDECRLISTAQSTPRFVSSGGTNGPPTPAKSMCADNFFRGYLNFPNYMASTQSFKAKLRSHSAPKQRPEPGSKKRLSLNELMESRSSLSGVRMQRSCSHVQEAINFKNAVMSKLDRPSEFNNLQRRL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7948711 7950785 + Maker00022249 Lcy2g0871 625636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0871 429 PANTHER IQ-DOMAIN 5-RELATED 6 396 - -
Lcy2g0871 429 ProSiteProfiles IQ motif profile. 144 171 - -
Lcy2g0871 429 MobiDBLite consensus disorder prediction 246 278 - -
Lcy2g0871 429 Pfam Protein of unknown function (DUF4005) 325 391 IPR025064 -
Lcy2g0871 429 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Lcy2g0871 429 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Lcy2g0871 429 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Lcy2g0871 429 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Lcy2g0871 429 Gene3D - 117 168 - -
Lcy2g0871 429 ProSiteProfiles IQ motif profile. 120 148 - -
Lcy2g0871 429 MobiDBLite consensus disorder prediction 253 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0871 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0871 Lcy-Chr2:7948711 Lcy4g1959 Lcy-Chr4:45950960 1.12E-09 dispersed
Lcy12g0677 Lcy-Chr12:8459747 Lcy2g0871 Lcy-Chr2:7948711 1.52E-52 wgd
Lcy2g0871 Lcy-Chr2:7948711 Lcy3g2162 Lcy-Chr3:48528838 3.49E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37