Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0889 ATGATGATCGGCGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTGACGATACCGGAGGAACCTGCAAGCGAGACGCGGTTTCCTTTTCCGTTGAGCGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGCGATTATTCTCCCTATTATTTGCAGGAAGCCCTAGCTGCACTCCAGCGATATATGCCTCCGACGAGCGAGGCGGAGATTGAATCTGATTCCGAGCTGTCCGGTCGAGAATCGGACGTTCCGGTGGATGCTTACTCTTGCGATCATTTTCGGATTTTCGAGTTCAAGGTGAGGAAGTGCACGCGTGGACGGTCTCATGACTGGACGGAGTGTCCGTATGCTCATCCCGGCGAGAAGGCTCGCCGGAGGGATCCGAGGAAGTTTCATTACTCTGGTACGGCGTGCCCTGATTTTCGAAAAGGAAACTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTGTTTGAGTGCTGGCTTCATCCCGCTCGTTACCGGACTCAGCCATGTAAGGATGGGACTAACTGTCGAAGGAGAGTCTGTTTCTTCGCTCACACTCCTGAGCAACTTAGGGTTTTACCTCAGCAGAGCCCGAGAAGCTCGAGCTCGCCTGAATCGTATGATGAATCCCCTCTGCGGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCATCTCCGGTGTCTGGTTCACCGTCGGCGACTCCGGTGGACTCTCCACCGATGTCACCAATGACTCGCTCGCTCGGCCGGTCTCTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCCCTCCGGAACATGCATCTGAGCAAGGTCAAATCTCTACCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTATCCATCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCGACGAGTCATGGAGTTGGGCTGCTAGACTTCTCCGACCATGGATTCGACGAGGAACCGGTGATGGAGCGAGTTGAATCGGGAAGGCAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGCCGATTCTTCAAGTCCTTCCGCCTGCACACCGGACGTTGGGTGGATATCAGAGCTGGTGAAGTGA 1149 54.22 MMIGERHRPGPVVHITPLTIPEEPASETRFPFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYMPPTSEAEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSSSSPESYDESPLRDGSCAKSLPFLSSPVSGSPSATPVDSPPMSPMTRSLGRSLGSSSINEMVASLRNMHLSKVKSLPSSWNVQIGSPGYPSRIRPGFCSLPTTPTRAPTSHGVGLLDFSDHGFDEEPVMERVESGRQLRAKMLEKLSKENSLDLADSSSPSACTPDVGWISELVK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8141815 8142963 - Maker00022200 Lcy2g0889 625654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0889 382 MobiDBLite consensus disorder prediction 199 260 - -
Lcy2g0889 382 Pfam RNA-binding, Nab2-type zinc finger 176 192 - -
Lcy2g0889 382 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872(InterPro)
Lcy2g0889 382 SMART c3hfinal6 171 194 IPR000571 GO:0046872(InterPro)
Lcy2g0889 382 SMART c3hfinal6 136 162 IPR000571 GO:0046872(InterPro)
Lcy2g0889 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 161 IPR000571 GO:0046872(InterPro)
Lcy2g0889 382 MobiDBLite consensus disorder prediction 199 216 - -
Lcy2g0889 382 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Lcy2g0889 382 MobiDBLite consensus disorder prediction 229 260 - -
Lcy2g0889 382 Gene3D - 136 200 - -
Lcy2g0889 382 PANTHER UNKEMPT FAMILY MEMBER 50 382 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0889 Lcy-Chr2:8141815 Lcy5g0682 Lcy-Chr5:8751751 9.05E-58 dispersed
Lcy11g0461 Lcy-Chr11:9861668 Lcy2g0889 Lcy-Chr2:8141815 8.68E-23 transposed
Lcy4g0674 Lcy-Chr4:8149102 Lcy2g0889 Lcy-Chr2:8141815 8.70E-68 transposed
Lcy4g2216 Lcy-Chr4:48809440 Lcy2g0889 Lcy-Chr2:8141815 1.41E-155 transposed
Lcy6g0313 Lcy-Chr6:2946879 Lcy2g0889 Lcy-Chr2:8141815 7.91E-54 transposed
Lcy13g2165 Lcy-Chr13:40596457 Lcy2g0889 Lcy-Chr2:8141815 3.40E-79 wgd
Lcy2g0889 Lcy-Chr2:8141815 Lcy9g1994 Lcy-Chr9:44798174 4.25E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19745 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0889 - - - 0.0