Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0938 | ATGGAGAATCATCAGGAGGTTGAAGCCGAGGAAGAAGATGGAGTGGGACCAACCGCCGTGGAGGAGGAAGAAAATGGAGTTGTGGGTTCGAGCTTGACTCTGGAGAAGGTCGCTGCGGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAGAAGCACATTCAAGAGCGCAAAGAGAGGCGCTCGGTGCTAGAAAGGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACAGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTTGAAGATTTCGACCTTTTGACAATTATTGGTCGAGGTGCTTTCGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATTTATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCCGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTGACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATATTTGTATCTGATCATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTGGGTAGATTTTATGTCGCTCAAAGTGTTTTGGCAATAGAGTCGATTCATAAACATAACTACATTCACAGAGACATAAAACCTGATAACCTTCTGCTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGTGCAAATCTGTCTTCTATAAATGAAAATGAAGCCTTTGATGATGATAACTTGCCCGACACAGTGGACGTGGATGAGAGCGTTCCAGGTAAAAAAAGTGGGAGGCGCTGGAAGAGCCCCCTTGAACAACTTCAACATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACCGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGATTGGTGGTCTCTTGGTGCAATAACGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACCACATGCAGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACTTGATCAGTAGGCTGCTTTGCGATGCTGAGCATAGGCTTGGTTCTGGAGGCGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTATGATATCGATGCAGCATTTAAGCCCGAGGTCAATGGGGAGCTTGATACACAGAATTTTATGCAATTTGAGGAGGTTGATCCACCGCCAACTAGAACTGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTACATCATTCTTTTGTGGAACTATGGACTATTATGGTGGCAAAGGAAAAGGGAAAAGCCTCTGCGTTGCTTGGATCATTAGGATCAGTTAGAGAACGGAGAAACTTGTTGAGACATTCTCATACTTCACTTTCTGCAAAGCCCATTCTAAGTTTTACGTCAAATCGCCAGAACTCGAATTTGAAGTCAAGCACCACCCCTATTCGAACTTCATCCGTTGACTCTACACAAAGTGACTCGGCATTGAACTACTCTACCAACTACTCAACAGATGACAGGGAAGCCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA | 1773 | 42.98 | MENHQEVEAEEEDGVGPTAVEEEENGVVGSSLTLEKVAAAKQYIENHYKAQKKHIQERKERRSVLERKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASDCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVGRFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCANLSSINENEAFDDDNLPDTVDVDESVPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAITYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDLISRLLCDAEHRLGSGGADQIKAHPWFKDTEWDKLYDIDAAFKPEVNGELDTQNFMQFEEVDPPPTRTGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLHHSFVELWTIMVAKEKGKASALLGSLGSVRERRNLLRHSHTSLSAKPILSFTSNRQNSNLKSSTTPIRTSSVDSTQSDSALNYSTNYSTDDREAILASSGDALSQ | 590 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8673721 | 8682934 | + | Maker00022352 | Lcy2g0938 | 625703 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0938 | 590 | ProSiteProfiles | Protein kinase domain profile. | 106 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0938 | 590 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Lcy2g0938 | 590 | SUPERFAMILY | Protein kinase-like (PK-like) | 88 | 462 | IPR011009 | - | |
Lcy2g0938 | 590 | FunFam | Non-specific serine/threonine protein kinase | 190 | 257 | - | - | |
Lcy2g0938 | 590 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g0938 | 590 | CDD | MobB_NDR_LATS-like | 40 | 101 | - | - | |
Lcy2g0938 | 590 | SMART | pkinase_C_6 | 414 | 478 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0938 | 590 | ProSitePatterns | Protein kinases ATP-binding region signature. | 112 | 135 | IPR017441 | GO:0005524(InterPro) | |
Lcy2g0938 | 590 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 31 | 482 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Lcy2g0938 | 590 | FunFam | Non-specific serine/threonine protein kinase | 67 | 189 | - | - | |
Lcy2g0938 | 590 | Pfam | Protein kinase C terminal domain | 432 | 476 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0938 | 590 | MobiDBLite | consensus disorder prediction | 539 | 571 | - | - | |
Lcy2g0938 | 590 | SMART | serkin_6 | 106 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0938 | 590 | MobiDBLite | consensus disorder prediction | 271 | 290 | - | - | |
Lcy2g0938 | 590 | Gene3D | Phosphorylase Kinase; domain 1 | 96 | 191 | - | - | |
Lcy2g0938 | 590 | CDD | STKc_NDR_like | 104 | 477 | - | - | |
Lcy2g0938 | 590 | FunFam | Non-specific serine/threonine protein kinase | 312 | 431 | - | - | |
Lcy2g0938 | 590 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 430 | - | - | |
Lcy2g0938 | 590 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lcy2g0938 | 590 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 414 | 486 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0938 | 590 | Pfam | Protein kinase domain | 306 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0938 | 590 | Pfam | Protein kinase domain | 108 | 255 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0938 | Lcy-Chr2:8673721 | Lcy5g0028 | Lcy-Chr5:472393 | 1.18E-55 | dispersed | |
Lcy2g0938 | Lcy-Chr2:8673721 | Lcy2g0940 | Lcy-Chr2:8698502 | 1.57E-17 | proximal | |
Lcy13g0382 | Lcy-Chr13:4356987 | Lcy2g0938 | Lcy-Chr2:8673721 | 1.00E-214 | transposed | |
Lcy1g0090 | Lcy-Chr1:816900 | Lcy2g0938 | Lcy-Chr2:8673721 | 4.07E-204 | transposed | |
Lcy3g1277 | Lcy-Chr3:38645228 | Lcy2g0938 | Lcy-Chr2:8673721 | 7.49E-222 | transposed | |
Lcy2g0938 | Lcy-Chr2:8673721 | Lcy4g2246 | Lcy-Chr4:49025183 | 4.34E-17 | wgd | |
Lcy2g0938 | Lcy-Chr2:8673721 | Lcy9g1957 | Lcy-Chr9:44530573 | 2.13E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65735 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0938 | K08790 | - | csv:101208238 | 925.235 |