Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0938 ATGGAGAATCATCAGGAGGTTGAAGCCGAGGAAGAAGATGGAGTGGGACCAACCGCCGTGGAGGAGGAAGAAAATGGAGTTGTGGGTTCGAGCTTGACTCTGGAGAAGGTCGCTGCGGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAGAAGCACATTCAAGAGCGCAAAGAGAGGCGCTCGGTGCTAGAAAGGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACAGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTTGAAGATTTCGACCTTTTGACAATTATTGGTCGAGGTGCTTTCGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATTTATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCCGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTGACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATATTTGTATCTGATCATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTGGGTAGATTTTATGTCGCTCAAAGTGTTTTGGCAATAGAGTCGATTCATAAACATAACTACATTCACAGAGACATAAAACCTGATAACCTTCTGCTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGTGCAAATCTGTCTTCTATAAATGAAAATGAAGCCTTTGATGATGATAACTTGCCCGACACAGTGGACGTGGATGAGAGCGTTCCAGGTAAAAAAAGTGGGAGGCGCTGGAAGAGCCCCCTTGAACAACTTCAACATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACCGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGATTGGTGGTCTCTTGGTGCAATAACGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACCACATGCAGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACTTGATCAGTAGGCTGCTTTGCGATGCTGAGCATAGGCTTGGTTCTGGAGGCGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTATGATATCGATGCAGCATTTAAGCCCGAGGTCAATGGGGAGCTTGATACACAGAATTTTATGCAATTTGAGGAGGTTGATCCACCGCCAACTAGAACTGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTACATCATTCTTTTGTGGAACTATGGACTATTATGGTGGCAAAGGAAAAGGGAAAAGCCTCTGCGTTGCTTGGATCATTAGGATCAGTTAGAGAACGGAGAAACTTGTTGAGACATTCTCATACTTCACTTTCTGCAAAGCCCATTCTAAGTTTTACGTCAAATCGCCAGAACTCGAATTTGAAGTCAAGCACCACCCCTATTCGAACTTCATCCGTTGACTCTACACAAAGTGACTCGGCATTGAACTACTCTACCAACTACTCAACAGATGACAGGGAAGCCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA 1773 42.98 MENHQEVEAEEEDGVGPTAVEEEENGVVGSSLTLEKVAAAKQYIENHYKAQKKHIQERKERRSVLERKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASDCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVGRFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCANLSSINENEAFDDDNLPDTVDVDESVPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAITYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDLISRLLCDAEHRLGSGGADQIKAHPWFKDTEWDKLYDIDAAFKPEVNGELDTQNFMQFEEVDPPPTRTGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLHHSFVELWTIMVAKEKGKASALLGSLGSVRERRNLLRHSHTSLSAKPILSFTSNRQNSNLKSSTTPIRTSSVDSTQSDSALNYSTNYSTDDREAILASSGDALSQ 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8673721 8682934 + Maker00022352 Lcy2g0938 625703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0938 590 ProSiteProfiles Protein kinase domain profile. 106 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0938 590 MobiDBLite consensus disorder prediction 1 19 - -
Lcy2g0938 590 SUPERFAMILY Protein kinase-like (PK-like) 88 462 IPR011009 -
Lcy2g0938 590 FunFam Non-specific serine/threonine protein kinase 190 257 - -
Lcy2g0938 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0938 590 CDD MobB_NDR_LATS-like 40 101 - -
Lcy2g0938 590 SMART pkinase_C_6 414 478 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0938 590 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Lcy2g0938 590 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 482 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lcy2g0938 590 FunFam Non-specific serine/threonine protein kinase 67 189 - -
Lcy2g0938 590 Pfam Protein kinase C terminal domain 432 476 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0938 590 MobiDBLite consensus disorder prediction 539 571 - -
Lcy2g0938 590 SMART serkin_6 106 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0938 590 MobiDBLite consensus disorder prediction 271 290 - -
Lcy2g0938 590 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Lcy2g0938 590 CDD STKc_NDR_like 104 477 - -
Lcy2g0938 590 FunFam Non-specific serine/threonine protein kinase 312 431 - -
Lcy2g0938 590 Gene3D Transferase(Phosphotransferase) domain 1 192 430 - -
Lcy2g0938 590 MobiDBLite consensus disorder prediction 1 27 - -
Lcy2g0938 590 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 486 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0938 590 Pfam Protein kinase domain 306 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0938 590 Pfam Protein kinase domain 108 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0938 Lcy-Chr2:8673721 Lcy5g0028 Lcy-Chr5:472393 1.18E-55 dispersed
Lcy2g0938 Lcy-Chr2:8673721 Lcy2g0940 Lcy-Chr2:8698502 1.57E-17 proximal
Lcy13g0382 Lcy-Chr13:4356987 Lcy2g0938 Lcy-Chr2:8673721 1.00E-214 transposed
Lcy1g0090 Lcy-Chr1:816900 Lcy2g0938 Lcy-Chr2:8673721 4.07E-204 transposed
Lcy3g1277 Lcy-Chr3:38645228 Lcy2g0938 Lcy-Chr2:8673721 7.49E-222 transposed
Lcy2g0938 Lcy-Chr2:8673721 Lcy4g2246 Lcy-Chr4:49025183 4.34E-17 wgd
Lcy2g0938 Lcy-Chr2:8673721 Lcy9g1957 Lcy-Chr9:44530573 2.13E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65735 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0938 K08790 - csv:101208238 925.235