Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0940 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTCCCTCAAGAAGATCAATCCATAGCCAAGTTTCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTGAACAGAGATGGGGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACTGATGATCAGTTGAGTTTAGCGGACATTGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAGGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGTTCTTTAGCTGATTTTCTGAAAAAGGTTAAAAAAATTCAAGAACCATATCTTGCTGTCCTTTGTAAGCAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATCGTTGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGGCTTATATTACTCGAATGTGCAACCGGAAAATTCCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTTTGCAAAAGGACCCAAAGGATAGACTGTCTGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1068 41.1 MRKGGFSNNLNLKLNLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAVLCKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQKDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8698502 8703077 - Maker00022085 Lcy2g0940 625705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0940 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Lcy2g0940 355 PRINTS Tyrosine kinase catalytic domain signature 146 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 PRINTS Tyrosine kinase catalytic domain signature 183 201 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 SMART serkin_6 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 FunFam Mitogen-activated protein kinase kinase 6 152 350 - -
Lcy2g0940 355 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
Lcy2g0940 355 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 17 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy2g0940 355 SUPERFAMILY Protein kinase-like (PK-like) 55 337 IPR011009 -
Lcy2g0940 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Lcy2g0940 355 CDD PKc_MAPKK_plant_like 69 335 - -
Lcy2g0940 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0940 Lcy-Chr2:8698502 Lcy4g2246 Lcy-Chr4:49025183 3.01E-165 dispersed
Lcy2g0938 Lcy-Chr2:8673721 Lcy2g0940 Lcy-Chr2:8698502 1.57E-17 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65736 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0940 K20603 - csv:101204545 687.567