Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0940 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTCCCTCAAGAAGATCAATCCATAGCCAAGTTTCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTGAACAGAGATGGGGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACTGATGATCAGTTGAGTTTAGCGGACATTGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAGGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGTTCTTTAGCTGATTTTCTGAAAAAGGTTAAAAAAATTCAAGAACCATATCTTGCTGTCCTTTGTAAGCAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATCGTTGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGGCTTATATTACTCGAATGTGCAACCGGAAAATTCCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTTTGCAAAAGGACCCAAAGGATAGACTGTCTGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1068 41.1 MRKGGFSNNLNLKLNLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAVLCKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQKDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8698502 8703077 - Maker00022085 Lcy2g0940 625705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0940 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Lcy2g0940 355 PRINTS Tyrosine kinase catalytic domain signature 146 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 PRINTS Tyrosine kinase catalytic domain signature 183 201 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 SMART serkin_6 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0940 355 FunFam Mitogen-activated protein kinase kinase 6 152 350 - -
Lcy2g0940 355 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
Lcy2g0940 355 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 17 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy2g0940 355 SUPERFAMILY Protein kinase-like (PK-like) 55 337 IPR011009 -
Lcy2g0940 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Lcy2g0940 355 CDD PKc_MAPKK_plant_like 69 335 - -
Lcy2g0940 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0940 K20603 - - csv:101204545 687.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0940 Lcy-Chr2:8698502 Lcy4g2246 Lcy-Chr4:49025183 3.01E-165 dispersed
Lcy2g0938 Lcy-Chr2:8673721 Lcy2g0940 Lcy-Chr2:8698502 1.57E-17 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0940 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.2 6.7e-136 481.1
Lcy4g2246 . 42 339 MAP Kinase Kinase Gene Family AT4G26070 65.9 5.7e-111 398.3
Lcy4g2203 . 26 355 MAP Kinase Kinase Gene Family AT4G26070 55.6 1.5e-106 383.6
Lcy2g0940 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.6e-134 476.5
Lcy4g2246 . 16 339 MAP Kinase Kinase Gene Family AT4G29810 61.5 9.7e-111 397.5
Lcy4g2203 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 59.5 2.8e-110 396.0
Lcy10g0180 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT1G51660 68.5 8.8e-126 447.6
Lcy5g2364 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.9 1.9e-83 307.0
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT3G21220 67.4 7.6e-127 451.1
Lcy5g2364 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 7.2e-85 311.6
Lcy4g2203 . 1 359 MAP Kinase Kinase Gene Family AT5G56580 83.3 3.3e-170 595.1
Lcy2g0940 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 60.2 2.4e-120 429.5
Lcy4g2246 . 16 323 MAP Kinase Kinase Gene Family AT5G56580 56.5 1.9e-96 350.1
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.7 2.0e-107 386.3
Lcy13g0089 . 78 341 MAP Kinase Kinase Gene Family AT1G18350 52.8 8.3e-77 284.6
Lcy5g2364 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 1.7e-79 293.5
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.0e-114 410.6
Lcy13g0089 . 82 341 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65736 None None None None Lcy PK