Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0940 | ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTCCCTCAAGAAGATCAATCCATAGCCAAGTTTCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTGAACAGAGATGGGGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACTGATGATCAGTTGAGTTTAGCGGACATTGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAGGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGTTCTTTAGCTGATTTTCTGAAAAAGGTTAAAAAAATTCAAGAACCATATCTTGCTGTCCTTTGTAAGCAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATCGTTGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGGCTTATATTACTCGAATGTGCAACCGGAAAATTCCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTTTGCAAAAGGACCCAAAGGATAGACTGTCTGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA | 1068 | 41.1 | MRKGGFSNNLNLKLNLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAVLCKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQKDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8698502 | 8703077 | - | Maker00022085 | Lcy2g0940 | 625705 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0940 | 355 | ProSiteProfiles | Protein kinase domain profile. | 71 | 331 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0940 | 355 | Pfam | Protein kinase domain | 73 | 331 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0940 | 355 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 150 | - | - | |
Lcy2g0940 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 146 | 159 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g0940 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 183 | 201 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g0940 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 249 | 271 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g0940 | 355 | SMART | serkin_6 | 71 | 331 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0940 | 355 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g0940 | 355 | FunFam | Mitogen-activated protein kinase kinase 6 | 152 | 350 | - | - | |
Lcy2g0940 | 355 | FunFam | Mitogen-activated protein kinase kinase 6 | 41 | 150 | - | - | |
Lcy2g0940 | 355 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 17 | 351 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Lcy2g0940 | 355 | SUPERFAMILY | Protein kinase-like (PK-like) | 55 | 337 | IPR011009 | - | |
Lcy2g0940 | 355 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 351 | - | - | |
Lcy2g0940 | 355 | CDD | PKc_MAPKK_plant_like | 69 | 335 | - | - | |
Lcy2g0940 | 355 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 100 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0940 | Lcy-Chr2:8698502 | Lcy4g2246 | Lcy-Chr4:49025183 | 3.01E-165 | dispersed | |
Lcy2g0938 | Lcy-Chr2:8673721 | Lcy2g0940 | Lcy-Chr2:8698502 | 1.57E-17 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65736 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0940 | K20603 | - | csv:101204545 | 687.567 |