Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0946 ATGGCCAACTCTGGATTTTTCTGCTCCTCAACTCTCTTAGAAACTGACTCTGTTCCTCAACCAAAATCCTTTTCCTCTATTTCAGCCTCCGACCATTGGGTCAAGGCTGCCAACGCTCTCAGCCACACCCATTTTGAGGAGGTTTGTCGCATGGTGTCGGAGTTTCAAGAGGCTCAAACTGTTGACATCGAAGGCACCACCCTCACTGTTGCTCAGGTCACCGCCATTGCTCGTCGCAGCGATGTCAAAGTTAACCTGAACGAAGCCGTGGCCCGTGATCGTGTGGCCAAAAGTGCAAATTGGGTTGCTGAGAAAATCTCTCGTGGGATCGATGTATATGGAGTTACCACTGGCTTTGGCGCCACCTCCCACAGGCGTACGACCAAGACAGCCGATCTCCAGACAGAGCTCATTAGGTTCCTCAACGCCGGAGTCATAGGAAAGGACAGTCTTCCATCTAGCTACTCAAAGGCAGCCATGCTTGTTAGAACAAACACATTGATGCAAGGCTACTCGGGCATTCGTTGGGAAATTCTTGAAGCTGTGGTGAAGCTCATGAATCAGAATTTGATCCCTAAATTGCCTTTGAGAGGGACGATCACAGCTTCAGGAGATCTTGTTCCACTGTCTTATATTGCTGGCGTTGTCACTGGAAGGCACAATTCCAAGGTTACCACCATGGAAGGCGACGAGATCACAGCCATGGAAGCTCTGAAGAGAGCTGGAATTGGAGGCCCATTTGAGCTTCAAGCAAAGGAAGGCTTAGCTCTTGTCAATGGAACAGCCGTCGGGTCTGCCGTAGCCGCCACAGTCTGCTATGATGCCAATATTTTGGCTCTTTTAGCCGTCGTTCTCTCTGCTTTGTTCTGTGAGGCCATGCTCGGCAAGCCAGAATTTGCAGACCCATTGACCCATAAGCTCAAGCACCACCCGGGCCAGATTGAATCAGCCGCAGCCATGGAGTTTCTCTTGAACCAAAGCGACTTTATGAAAGAAGCAAAAATCCGCCATGAAAATGACCCATTGACAAAGCCAAAACAAGACCGCTATGCACTTCGAACTTCTCCTCAATGGCTCGGGCCCCAAATCGAAGTCATTCGAACGGCCACCCATTCGATCGAAAGGGAAATCAACTCTGTAAATGATAACCCACTAATCGACGTCAATCGGGACTTAGCTCTACATGGAGGAAACTTTCAGGGGACACCAATCGGCGTCTCCATGGATAATCTTCGAATCGCCATCGCTGCAATTGGAAAACTGATGTTCGCCCAATTCTCTGAGCTCGTCTGCGATCATTACAACAATGGATTGCCATCTAATCTGAGCGGCGGGCCAAACCCTAGCTTGGATTACGGCTTCAAAGGGGCGGAAATCGCCATGGCTGCTTATTGCTCTGAGCTCCAGTACTTAGCAAACCCTGTCACAACCCATGTCCAGAGTGCAGAGCAACACAATCAAGACGTAAACTCTCTAGGTCTAATCTCAGCCAGAAAATCCGCCGAAGCCATTGAAATTCTCAAGCTCATGTCAGCTACATACATGGTGGCGCTCTGCCAGGCGATCGATTTAAGGCAATACGAAGAAAACATGAGGGAAGTTGTGAAAAACGCGCTTCTACAAACCGTAAGAAGAACCCTATATGTTGCAGAGTACGGATCGCTTCTCGAATCACGATTCTGCGAGAAAGATCTCCTGCAAGTAATCGAGCGCGAGCCAGTCTTCTCCTACATCGACGATCCCGCCAACACTTCCTACGCCCTAATCCCTAAATTACTGGAAGTTGTAGTGGAAAGAGCGTTGAAAGGCGTTGCAGCAGCGAAAAGCGAGAATGGAGAGGAAACAGGAATCGCCATTTTCAAGCAAATCCCAGGGTTTCTAGAGGAATTAAAGGCGAAACTGGAAAAAGATGTTGAAACTGCGAGAGGGAGATTCGAGAATGGTGATTTCGCAGTGGAAAACAGAATCAAGAAATGCAGCACTTACCCGATCTACCGCTTTGTGAGGACTGAAGTGGGAACTCAACTGCTCAGCGGGGCGAAGAAGGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAAGCCATTAATGAAGGGAAGCTTGGAGATGTTCTGATCAACTGTTTGAAGAATTAG 2136 48.78 MANSGFFCSSTLLETDSVPQPKSFSSISASDHWVKAANALSHTHFEEVCRMVSEFQEAQTVDIEGTTLTVAQVTAIARRSDVKVNLNEAVARDRVAKSANWVAEKISRGIDVYGVTTGFGATSHRRTTKTADLQTELIRFLNAGVIGKDSLPSSYSKAAMLVRTNTLMQGYSGIRWEILEAVVKLMNQNLIPKLPLRGTITASGDLVPLSYIAGVVTGRHNSKVTTMEGDEITAMEALKRAGIGGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLAVVLSALFCEAMLGKPEFADPLTHKLKHHPGQIESAAAMEFLLNQSDFMKEAKIRHENDPLTKPKQDRYALRTSPQWLGPQIEVIRTATHSIEREINSVNDNPLIDVNRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDHYNNGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQYEENMREVVKNALLQTVRRTLYVAEYGSLLESRFCEKDLLQVIEREPVFSYIDDPANTSYALIPKLLEVVVERALKGVAAAKSENGEETGIAIFKQIPGFLEELKAKLEKDVETARGRFENGDFAVENRIKKCSTYPIYRFVRTEVGTQLLSGAKKVSPGEDIEKVVEAINEGKLGDVLINCLKN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8793689 8795824 - Maker00021783 Lcy2g0946 625711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0946 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824(InterPro)
Lcy2g0946 711 NCBIfam phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy2g0946 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Lcy2g0946 711 Pfam Aromatic amino acid lyase 68 541 IPR001106 -
Lcy2g0946 711 Gene3D - 23 261 IPR024083 -
Lcy2g0946 711 CDD PAL-HAL 66 525 IPR001106 -
Lcy2g0946 711 Gene3D - 528 654 IPR023144 -
Lcy2g0946 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Lcy2g0946 711 PANTHER HISTIDINE AMMONIA-LYASE 29 711 IPR001106 GO:0016841(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0946 Lcy-Chr2:8793689 Lcy4g0293 Lcy-Chr4:3579790 7.33E-292 dispersed
Lcy2g0946 Lcy-Chr2:8793689 Lcy1g1355 Lcy-Chr1:13124488 8.86E-284 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0946 K10775 - csv:101205510 1241.1