Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0950 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTGCGGATTTTGGATAGTGAAGGAGCAGTTGATGCTGGTAAAGATGTCACTAAATGTTCTGTTGCTTCTTTTGCTGATATTGATCTAAAAGAAACTCGGAGTTTTAGGTGCACAATTCCGCAATCTGTGGTTGGGAGCTCTCCTTCACACGAGATTGCTAGAATGAGTCCCCTTAAACCTCCAAAAATTCCAGTCGAATCGGCAGTTCGGCGCCCATCGTTTACTCGTTCGTCGTTTTCGAAGCCCAAATCAAGGCTAGTAGAGCCACCTTGTCCTGATGGTGTAAGTTTGGAAGAAGAAAAAACTCAAGCAAAATCAACATCTGGTTCACCATTCTATAGCTCTTCGAAGACGGATTCCCCAGCTAAGATAACTACTGCGACTAGTCCTCGAGATGCTCTTAAGTCGGCCCCAATAACTCCAAAGACACCATTGATTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGAAAAGGACCATTTTAATTGAATGGGTTGCATTTTTGTGCTTAACAGGGTGTTTGATTGCTAGCTTAACACTAGACAAGTTGGTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAGTGGTGTGTTCTGGTATTAGTTATTTTCTGTGGTCGATTATTTTCGCAATGGTTTATCAACTGCCTGGTTTTTTTGATTGAAAGAAACTTTCTACTCAAAAGAAAGGTTCTATATTTTGTCTTTGGGCTGAGGAAGAGTGTTATCATTTTTATATGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTATTTGATCAAAGCAGCAAGCGGTCTAAGAAAGGCAATGAAATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTCATTGGAGCAGGATTATGGCTGGTGAAAACTTTGTTGGTAAAAATACTGGCTGCTTCTTTTCAATGTGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAGTATATACTGCGCACTCTATCAGGACCTCCGCTGATGGAGATGGCTGAAAGAATTGGGAGAGCAGCAAGCACAGGGCAGTTGAGTTTTAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAGCTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGTCTAATCAATGTTATAAGGAGCTCTGGGCTGTCCACTATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGAGTGAGCAAAAGGACAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCAGGAACGTGGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTATCGTTTTATGAGCAAGGAGGAAGTTGATAATGTGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAGTGTTTATGTCGAACGCAAGTCGCTAGCCCACTCATTGAATGACACCAAAACTGCAATAGAGGAGCTAAACAAGCTTGCTTCTGCAATTGTATTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTGACGACTCAAGTACTCGTCTTCATTTCATCACAGCTTCTGCTGGTGGTTTTCATGTTTGGCAACACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTTGTGATGCATCCATTCGACGTGGGGGATCGTTGTGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGCGATTCGATCGAATTCTCTGTCGACTTTTCCACGTCAATTGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACTTAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTGTGCTCGTGAAGGAGATCGAAAATGTCAACAAGATGAAACTGGGTCTGTGCGTCAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGCCGCAGATCGGACCTCGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTCGGCATCAAGTATCATCTGCTACCTCAAGAAGTGCAGCTCAACTATGTGAGTTCAGCAGCTCCCATGGTTCCACCCTCGCGGAGATAA 2310 42.25 MADKKGTEQVVLRILDSEGAVDAGKDVTKCSVASFADIDLKETRSFRCTIPQSVVGSSPSHEIARMSPLKPPKIPVESAVRRPSFTRSSFSKPKSRLVEPPCPDGVSLEEEKTQAKSTSGSPFYSSSKTDSPAKITTATSPRDALKSAPITPKTPLIGSTGSEEEDDEEVYKTAELKVKERSGKKLKRTILIEWVAFLCLTGCLIASLTLDKLVTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVFGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKILAASFQCARFFDRIQESIFHQYILRTLSGPPLMEMAERIGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEESEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLYRFMSKEEVDNVLPLFEGAVETGKIKRKTLKNWLVSVYVERKSLAHSLNDTKTAIEELNKLASAIVLIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVLVKEIENVNKMKLGLCVNHTINFQNYGDKSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYVSSAAPMVPPSRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8833271 8837384 + Maker00022453 Lcy2g0950 625715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0950 769 MobiDBLite consensus disorder prediction 52 166 - -
Lcy2g0950 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Lcy2g0950 769 Gene3D - 598 647 IPR023408 -
Lcy2g0950 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
Lcy2g0950 769 MobiDBLite consensus disorder prediction 112 144 - -
Lcy2g0950 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g0950 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 68 759 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Lcy2g0950 769 PIRSF Memb_At2g17000 35 768 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0950 K22048 - - csv:101209209 1321.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0950 Lcy-Chr2:8833271 Lcy9g1946 Lcy-Chr9:44456524 1.09E-215 dispersed
Lcy13g0518 Lcy-Chr13:6427292 Lcy2g0950 Lcy-Chr2:8833271 1.81E-212 transposed
Lcy2g0950 Lcy-Chr2:8833271 Lcy9g1945 Lcy-Chr9:44447168 2.20E-179 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1988 . 849 1284 Mechanosensitive Ion Channel Family AT4G00290 62.8 2.0e-152 536.6
Lcy6g1111 . 93 801 Mechanosensitive Ion Channel Family AT5G10490 55.3 4.0e-193 672.2
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.5e-86 317.4
Lcy6g1111 . 122 769 Mechanosensitive Ion Channel Family AT1G58200 51.7 3.3e-166 582.8
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT1G58200 62.5 7.6e-99 359.0
Lcy8g1282 . 49 935 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.5e-267 919.1
Lcy3g0859 . 93 946 Mechanosensitive Ion Channel Family AT1G53470 51.7 7.1e-238 821.2
Lcy8g1282 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 53.7 2.0e-250 862.8
Lcy8g1282 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.8e-292 1001.9
Lcy3g0859 . 63 944 Mechanosensitive Ion Channel Family AT1G78610 57.1 8.0e-271 930.6
Lcy8g1282 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.2e-238 821.6
Lcy3g0859 . 273 943 Mechanosensitive Ion Channel Family AT2G17000 59.8 2.3e-225 779.6
Lcy8g1282 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 50.6 2.5e-163 573.2
Lcy9g1946 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 53.2 2.7e-182 636.3
Lcy2g0950 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 7.0e-199 691.4
Lcy9g1946 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 56.5 1.7e-197 686.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47