Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0978 ATGGGGTCCATGGCTAGATTTCTGATCGCTTCTCTTCTTCTTCTTCTTCTTCCTTGTGTCTTCGTCAATGCCAAGAGAACCTACATTGTTCGCATGAAACATCATGCTCTTCCTTCTGATTATCCCACCCACCATGACTGGTACTCTGCTCATCTTCAATCTCTGTCCTCCTCCACCACTTCTGATTCCCTTCTCTACACCTACACTTCCGCCTACCATGGCTTTGCTGCTTCTCTGGATCCAGATGAAGCTGAATTGCTCCGCCAATCGGATTCTGTTCTGGGTGTCTATGAGGATACTGTTTACAACCTTCACACCACTCGAACTCCGGGATTCCTCGGGCTCGACTCGGATTTCGGCTTGTGGGAAGGTCACAACACTCAGGATCTCGACCAGGCTTCTCACGACGTCATCATTGGGGTTCTCGACACCGGGATTTGGCCGGAGTCGAAGAGCTTTGATGACACCGGAATGCCGGAGATCCCATCAAGGTGGCGTGGAGAGTGCGAATCTGGACCCGATTTCAGCCCTTCACTCTGCAACAAGAAACTAATCGGAGCTCGCAGCTTCTCGAAGGGTTATCAGATGGCTTCTGGTGGTGGGTACTTCCGAAAACCCAGAGAAAACGAGTCGCCTCGAGACCAGGACGGGCACGGCACTCACACAGCTAGCACGGCTGCTGGGTCGCATGTGGCTAACGCGAGCTTACTTGGGTATGCCAGAGGCATTGCTCGTGGGATGGCTCCTCAAGCGAGAGTTGCGGCTTACAAGACCTGTTGGCCCACTGGTTGCTTTGGATCTGACATTCTTGCCGGTATGGATCGGGCAATATCGGACGGTGTCGATGTACTCTCACTCTCTTTAGGTGGTGGCTCTGCGCCGTATTACCGGGATACCATTGCAATCGGAGCATTTGCGGCCATGGAAAAGGGGGTTTTTGTTTCGTGCTCAGCTGGGAACAGTGGGCCAAACAAGGCCTCTCTGGCCAATGTGGCACCGTGGATCATGACGGTCGGAGCCGGAACTCTGGACCGAGACTTCCCAGCTTATGTCCAACTCGGAAATGGGAAAAGGTTCACTGGAGTGTCGCTCTACAGTGGCCAAGGAATGGGGAACAAGCCGGTGGCTTTGGTGTACAACAAAGGAAGCAACACCTCCAGCAACATGTGCTTGCCCGGATCCCTTGAGCCGGCGTTGGTCAGAGGGAAGGTGGTGATCTGCGACAGAGGAATCAACGCCAGAGTAGAAAAGGGAGGAGTGGTGAGAGATGCAGGCGGCATTGGGATGATTCTGGCGAACACAGCCGCTAGTGGGGAGGAATTGGTGGCTGACAGCCACTTGCTGCCGGCCGTGGCGGTGGGGAGGAAAACCGGCGACTTGATCCGGCAGTACGTGCGGTCAGTTTCGAAGCCCACGGCGGTGCTGAGCTTTGGTGGGACAGTTTTGAACGTGCGCCCATCTCCAGTGGTGGCGGCCTTCAGTTCCAGAGGACCCAACTTGGTAACGCCCCAAATCCTAAAGCCTGACGTTATTGGGCCTGGCGTTAACATCTTGGCTGCCTGGTCTGAGTCCATTGGGCCTACTGGACTGGACAGTGACAAGAGGAAAACTCAGTTCAACATTATGTCAGGAACATCCATGTCTTGCCCACATATAAGTGGGCTGGCGGCATTGCTGAAGGCAGCTCATCCTGAATGGAGTCCAAGTGCTATCAAATCTGCGTTAATGACCACTGCATACACGCAGGACAACACCAACTCCTCTCTCAGGGATGCTGCCGGAGGGGCGTTTTCCAATCCATGGGCTCATGGAGCTGGCCATGTTGATCCCCACAAAGCCCTCTCCCCTGGTCTTCTTTACGATATCTCGACCAATGATTACATTGCCTTCTTGTGCTCCTTGGACTATGGGATCGATCATGTTCAGGCGATTGTGAAGCGCACGAACATAACCTGCTCCAAAAAGTTTGCTGACCCAGGACAACTTAATTACCCTTCATTTTCAGTTGTGTTTGGGAGCAAGAGGGTTGTTCGATACACTCGTCAAGTCACGAATGTCGGGGCTGCAGGGTCGGTTTATGATGTGGCTACTACTGCTCCATCAGTTGTGAAGGTGATCGTGAAACCCTCAAGGCTTGTGTTCACTAAAGTTGGGGAGAAGAAGAGGTACACTGTTACATTTGTGGCGAGCAGGGATGCTGCTCAAACCATGAGATTTGGATTTGGATCGATTGCATGGAGCAATAACCAACACCAAGTCAGAAGCCCAGTGGCATTCGCCTGGACAAGGTTGTGA 2295 52.98 MGSMARFLIASLLLLLLPCVFVNAKRTYIVRMKHHALPSDYPTHHDWYSAHLQSLSSSTTSDSLLYTYTSAYHGFAASLDPDEAELLRQSDSVLGVYEDTVYNLHTTRTPGFLGLDSDFGLWEGHNTQDLDQASHDVIIGVLDTGIWPESKSFDDTGMPEIPSRWRGECESGPDFSPSLCNKKLIGARSFSKGYQMASGGGYFRKPRENESPRDQDGHGTHTASTAAGSHVANASLLGYARGIARGMAPQARVAAYKTCWPTGCFGSDILAGMDRAISDGVDVLSLSLGGGSAPYYRDTIAIGAFAAMEKGVFVSCSAGNSGPNKASLANVAPWIMTVGAGTLDRDFPAYVQLGNGKRFTGVSLYSGQGMGNKPVALVYNKGSNTSSNMCLPGSLEPALVRGKVVICDRGINARVEKGGVVRDAGGIGMILANTAASGEELVADSHLLPAVAVGRKTGDLIRQYVRSVSKPTAVLSFGGTVLNVRPSPVVAAFSSRGPNLVTPQILKPDVIGPGVNILAAWSESIGPTGLDSDKRKTQFNIMSGTSMSCPHISGLAALLKAAHPEWSPSAIKSALMTTAYTQDNTNSSLRDAAGGAFSNPWAHGAGHVDPHKALSPGLLYDISTNDYIAFLCSLDYGIDHVQAIVKRTNITCSKKFADPGQLNYPSFSVVFGSKRVVRYTRQVTNVGAAGSVYDVATTAPSVVKVIVKPSRLVFTKVGEKKRYTVTFVASRDAAQTMRFGFGSIAWSNNQHQVRSPVAFAWTRL 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9124001 9127509 + Maker00021941 Lcy2g0978 625743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0978 764 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Lcy2g0978 764 Gene3D - 631 761 - -
Lcy2g0978 764 Pfam PA domain 377 460 IPR003137 -
Lcy2g0978 764 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 757 IPR045051 -
Lcy2g0978 764 Pfam Peptidase inhibitor I9 27 105 IPR010259 -
Lcy2g0978 764 FunFam Subtilisin-like protease SBT1.5 631 762 - -
Lcy2g0978 764 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Lcy2g0978 764 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Lcy2g0978 764 PRINTS Subtilisin serine protease family (S8) signature 214 227 IPR015500 -
Lcy2g0978 764 MobiDBLite consensus disorder prediction 198 225 - -
Lcy2g0978 764 Pfam Subtilase family 135 584 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy2g0978 764 Gene3D Peptidase S8/S53 domain 136 627 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy2g0978 764 ProSiteProfiles Serine proteases, subtilase domain profile. 118 614 - -
Lcy2g0978 764 SUPERFAMILY Subtilisin-like 104 618 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy2g0978 764 CDD PA_subtilisin_like 350 473 - -
Lcy2g0978 764 Gene3D - 344 482 - -
Lcy2g0978 764 FunFam Subtilisin-like protease SBT1.9 19 105 - -
Lcy2g0978 764 SUPERFAMILY Protease propeptides/inhibitors 26 104 - -
Lcy2g0978 764 CDD Peptidases_S8_3 102 580 IPR034197 -
Lcy2g0978 764 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 105 IPR037045 -
Lcy2g0978 764 Pfam Fibronectin type-III domain 661 758 IPR041469 -
Lcy2g0978 764 FunFam Subtilisin-like protease SBT1.5 136 355 - -
Lcy2g0978 764 FunFam subtilisin-like protease SBT1.5 344 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0936 Lcy-Chr1:8169958 Lcy2g0978 Lcy-Chr2:9124001 2.26E-286 dispersed
Lcy2g0978 Lcy-Chr2:9124001 Lcy6g0219 Lcy-Chr6:2004756 5.55E-273 dispersed
Lcy13g2090 Lcy-Chr13:39890109 Lcy2g0978 Lcy-Chr2:9124001 3.66E-160 transposed
Lcy2g0978 Lcy-Chr2:9124001 Lcy3g2248 Lcy-Chr3:49315876 4.76E-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0978 - - - 0.0