Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0993 ATGGCGGCAGCTCAGCTCACAGGCTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAATGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCCCATGTGAGAGTGGGGGGTCTGGCCAACAGATCTTACACTGGGTTGGTTGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAGGCCATTGGGTGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTGCTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTTGTTGCAATTGGTGAAGGCAAGTCAATTGGAAATGCCAAAGTAGAATCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAGTTCAATGGCTCAAAGCATCTCATTCTGAAGGAAGACGATATAGTTGGTATTCTGGAAACAGATGACGCGAAAGATCTTCAGCCACTGAACGACAGGGTTTTGATCAAGGTGGCTGAGGCCGAGGAAAAAACAGCAGGAGGTTTGTTGCTGACAGAGGCAACCAAAGAGAAACCTTCTGTTGGAACGGTGATAGCAGTTGGCCCTGGTCATTTGGATGAGGAAGGCAACAGGAAACCACTATCCATCGCAGCGGGAAACAACGTGATGTACTCGAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCGTTGAGGGTTTCAGACGTCATTGCAGTTCTATCTTAG 768 48.05 MAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSYTGLVVRAATVVAPKYTSIRPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAIGEGKSIGNAKVESSVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSVGTVIAVGPGHLDEEGNRKPLSIAAGNNVMYSKYAGNEFKGKDGSDYIALRVSDVIAVLS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9273171 9276420 + Maker00021891 Lcy2g0993 625758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0993 255 Gene3D GroES chaperonin 56 156 IPR037124 GO:0006457(InterPro)
Lcy2g0993 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457(InterPro)
Lcy2g0993 255 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 CDD cpn10 162 254 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 SUPERFAMILY GroES-like 161 254 IPR011032 -
Lcy2g0993 255 SUPERFAMILY GroES-like 62 155 IPR011032 -
Lcy2g0993 255 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 Pfam Chaperonin 10 Kd subunit 162 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Lcy2g0993 255 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Lcy2g0993 255 FunFam 10 kDa chaperonin 160 255 - -
Lcy2g0993 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 56 252 IPR020818 GO:0005524(InterPro)|GO:0005759(PANTHER)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0009536(PANTHER)|GO:0044183(InterPro)|GO:0046872(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Lcy2g0993 255 SMART Cpn10_2 161 254 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 SMART Cpn10_2 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 CDD cpn10 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Lcy2g0993 255 PIRSF Cpn21 1 255 IPR017416 GO:0006457(InterPro)|GO:0046914(InterPro)|GO:1901671(InterPro)
Lcy2g0993 255 FunFam 20 kDa chaperonin, chloroplastic 57 156 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0993 K04078 - csv:101212396 454.521