Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0999 ATGTCTCGCCCGGCCGTTGCTTCATCCTTTCCGGCGACGGTGGCGATCGCATTGGCGGTGATTCAACTCGTCTTCGTAATTCCGGCCGCCGTCGTGGAAGCGCACACGAAGACGATTCCGGCGGATGCATCGAAGCTCGACGCATGGATCGCACACAACTTGAAAGAATTCAACCATCGGAAGGCCAAAGATACCGGCGTCAAGGCGCTGGACCGGCGGCTGGCGAAGGCGGAGGACAACGTTCGACTGATCACCGTTAGAAAAGACGGACGAGGAAATTTCTCGACGATCACCGAAGCGATCGAGAGCATTCCGGCCGGAAATCGGAGGCGAGTGGTGGTGTGGATCGGCGACGGAGTTTATCGCGAGAAGATTACGATCGAGGCTTCGAAGCCGTTCGTCACGCTGTACGGTCAGAAAGGAAAACGGCCGGTCATTACGTTCGACGGAACGGCGTCGGAATTTGGAACCGTCAAGAGCGCGACGGTGGCGGTGGAATCGGATTATTTCGTTGCCGTCAATATTGCGTTTATGAATTCAGCTCCAATGCCTGAGGTAGGAGGAACAGGAGGACAAGCAGTGGCGATGAGGATATCTGGGGATAAGGCAGCATTTCACAACTGCCATTTCATAGGGTTTCAGGACACATTGTGCGATGACAGAGGCAGACATTTTTTCAGGGATTGTTACATCCAAGGCACTGTTGACTTCATCTTTGGCAATGGGAAATCCCTCTACTTGAAAACCAGAATAAAATCAGTGGCGGAAGGCACAGGAGTGATCACAGCTCAAGCAAGGGAAGAAGCCACAGACGACAGCGGTTTCACATTTGCATATTGCAACATCACAGGAACTGGGGACACCTATTTAGGAAGAGCATGGAAAGAGAGAACTCGTGTGGTTTTTGCTTACACTTATATGGGAACTCTCATCAACACAGAAGGCTGGTCCGACAAAATGCATGGAAGCCAACCTAGAAAGAGTATGTACTACGGTGAGTACAAATGCATGGGGCCCGGGGCGACCCCCTCGGGACGAGTGCACTATGCCAGGATACTCTCGGACGAAGAAGCGAAGGCGTTTTTGAGTATGACTTATATCCAAGGAAACAAATGGCTTCTTCCACCCCCGGATCTCTCCCTTTCCCGCTCTCAACGCAATGTCTTCCATTGA 1173 52.09 MSRPAVASSFPATVAIALAVIQLVFVIPAAVVEAHTKTIPADASKLDAWIAHNLKEFNHRKAKDTGVKALDRRLAKAEDNVRLITVRKDGRGNFSTITEAIESIPAGNRRRVVVWIGDGVYREKITIEASKPFVTLYGQKGKRPVITFDGTASEFGTVKSATVAVESDYFVAVNIAFMNSAPMPEVGGTGGQAVAMRISGDKAAFHNCHFIGFQDTLCDDRGRHFFRDCYIQGTVDFIFGNGKSLYLKTRIKSVAEGTGVITAQAREEATDDSGFTFAYCNITGTGDTYLGRAWKERTRVVFAYTYMGTLINTEGWSDKMHGSQPRKSMYYGEYKCMGPGATPSGRVHYARILSDEEAKAFLSMTYIQGNKWLLPPPDLSLSRSQRNVFH 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9343520 9347653 + Maker00021787 Lcy2g0999 625764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0999 390 Gene3D - 80 376 IPR012334 -
Lcy2g0999 390 Coils Coil 67 87 - -
Lcy2g0999 390 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Lcy2g0999 390 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 373 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lcy2g0999 390 FunFam Pectinesterase 79 375 - -
Lcy2g0999 390 Pfam Pectinesterase 84 370 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy2g0999 390 SUPERFAMILY Pectin lyase-like 83 373 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1971 Lcy-Chr13:38749996 Lcy2g0999 Lcy-Chr2:9343520 4.46E-60 dispersed
Lcy2g0999 Lcy-Chr2:9343520 Lcy6g1084 Lcy-Chr6:12130314 5.34E-130 dispersed
Lcy2g0999 Lcy-Chr2:9343520 Lcy4g1777 Lcy-Chr4:43837242 1.91E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0999 K01051 - csv:101214012 693.73