Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1003 ATGGGGAGGGAATTGCAGAAGCAGCCGCAGCAAGAGATGGCGTCCGCGGTGGAGCAGTTGCTCGCTGTGAATCCTTACAATCCCGACATCCTCCCCGATCTAGAAAACTACGTTAACGAGCAGGTCTCGTCAGAAACGTACAGTTTAGATGCTAATCTATGCCTTCTTCGCCTCTACCAGTTTGAGCCAGAAAGAATGAGTACTCAAATTGTGGCTCGCATCCTGGTCAAGGCTCTGATGGCAATGCCAGCTCCAGATTTCAGCCTGTGTCTCTTTCTAATTCCAGAACGAGTGGTATGCATTAACTCTTTTGTAGTTTATCAAGCCTTAAGTTTCATTAATCAAATGGAGGATCAGTTCAAGACTTTGATTATACTTTCCCACTATTTGGAGACTGGTAAATTCCGTCAATTCTGGGATGAAGCCGCTAAGAACCGTCACATAGTTGAAGCTGTGCCAGGTTTTGAGCAAGCAATACAAGCTTATGCAGTCCATGTTCTTTCTTTAACTTATCAGAAGGTTCCTAGATCTGTGCTTGCTGAGGCAATCAATATTGAGGGCCTATCTTTGGACAAATTTCTTGAGCACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCATGGGAAGGGCCAACTTATTGTTATACCATCCAACGAATTCAACCATCCTGAACTGAAGAAGAAATCCTCCGATAGCATTCCCTTGGAACACATTACTCGCATCTTTCCAATTCTTGGCTAA 747 44.18 MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVVCINSFVVYQALSFINQMEDQFKTLIILSHYLETGKFRQFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWILEKGHGKGQLIVIPSNEFNHPELKKKSSDSIPLEHITRIFPILG 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9419176 9422364 + Maker00021869 Lcy2g1003 625768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1003 248 FunFam Eukaryotic translation initiation factor 3 subunit K 144 247 - -
Lcy2g1003 248 SUPERFAMILY Winged helix DNA-binding domain 153 245 IPR036390 -
Lcy2g1003 248 ProSiteProfiles PCI domain profile. 47 222 IPR000717 -
Lcy2g1003 248 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 8 248 IPR009374 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy2g1003 248 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 11 245 IPR009374 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)
Lcy2g1003 248 Gene3D - 144 246 IPR036388 -
Lcy2g1003 248 Gene3D ARM repeat; domain 1 8 141 IPR016020 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006446(InterPro)|GO:0043022(InterPro)
Lcy2g1003 248 FunFam Eukaryotic translation initiation factor 3 subunit K 9 141 - -
Lcy2g1003 248 Pfam CSN8/PSMD8/EIF3K family 67 208 IPR033464 -
Lcy2g1003 248 SUPERFAMILY ARM repeat 10 151 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1003 Lcy-Chr2:9419176 Lcy2g1028 Lcy-Chr2:9916533 2.08E-105 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1003 K15028 - csv:101214255 438.728