Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1028 ATGGGGAGAGAATTGCAGAAGCAGCCGCAGCAAGAGATGGCGTCCGCGGTGGAGCAGTTGCTTGCTGTGAATCCTTACAATCCCAACATCCTCCCCGATCTCGAAAACTACGTTAACGAGCAGGTCTCGTCAGAAACGTACAGTTTAGATGCTAATCTATGTCTTCTTCGCCTCTACCAGTTAGAGCCAGAAAGAATGAGTACTCAAATTGTGGCTCGCATCCTGGTCAAGGCTCTGATGGCAATGCCAGCTCCAGATTTCAGCCTGTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGATCAGTTCAAGACTTTGATTATACTCTCCCACTATTTGGAGACTGGTAAATTCCGTCAATTCTGGGATGAAGCTGCTAAGAACCGTCACATAGTTGAAGCTGTGCCAGGTTTTGAGCAAGCAATACAAGCTTATGCGGTCCATGTTCTTTCTTTAACTTATCAGAAGGTTCATAGATCTGTGCTTGCTGAGGTATGGATTTATAAAGCAGTTGTCTGCCATCTTATGTTGAATGATCTTGGAGTTGGTACTTTTAACTATTGTTGTTATTTTTAA 579 43.7 MGRELQKQPQQEMASAVEQLLAVNPYNPNILPDLENYVNEQVSSETYSLDANLCLLRLYQLEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVHRSVLAEVWIYKAVVCHLMLNDLGVGTFNYCCYF 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9916533 9919525 - Maker00022713 Lcy2g1028 625793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1028 192 Pfam CSN8/PSMD8/EIF3K family 67 165 IPR033464 -
Lcy2g1028 192 Gene3D ARM repeat; domain 1 8 125 IPR016020 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006446(InterPro)|GO:0043022(InterPro)
Lcy2g1028 192 FunFam Eukaryotic translation initiation factor 3 subunit K 9 125 - -
Lcy2g1028 192 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 11 166 IPR009374 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)
Lcy2g1028 192 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 8 191 IPR009374 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy2g1028 192 Gene3D - 128 177 IPR036388 -
Lcy2g1028 192 SUPERFAMILY ARM repeat 10 135 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1003 Lcy-Chr2:9419176 Lcy2g1028 Lcy-Chr2:9916533 2.08E-105 dispersed
Lcy2g1028 Lcy-Chr2:9916533 Lcy2g1038 Lcy-Chr2:10099540 2.08E-86 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1028 K15028 - csv:101214255 319.701