Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1091 ATGGCGGGCCGCCTCCGTTTCATGGATTATCTTGACGAGGAACAAAGGCGTGCGATTACCATGAAGAGCTCCTCGATTGGTCTACGGTACAAGGAATACTCTATAAACCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGTGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCCGTGGAGGGTGTGCACATTCAAACCCATGCCGTTTTGCGACAGGCTTGGATTGAGAAACTTACGCCATGTTTGGTTCTTAATAAGATTGATAGGTTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGGATAATGAGTGCTTACAAGTCCGAGAAATATCTGTCTGATGTGGATTCTATACTCGCAGGTTCTTCAGGTGAGGTAAACGATGAGAATCTTGAGTTTATTGAGGATGACGAGGAAGATACATTTCAACCACAGAAAGGGAATGTGGTATTTGTGTGTGCTTTAGATGGGTGGGGATTTGGAATTAATGAGTTTGCTGAGTTTTATGCTTCAAAACTTGGGGCAAATGTATCTGCGTTGAAGAAGGCCTTGTGGGGTCCTCGGTATTTTAATCCAAAGACGAAGATGATAGTTGGTAAGAAGGCCATGGCTGGAGGAAGTAAAGCTCGGCCTATGTTTGTTCAGTTTGTGCTTGAAAGACTTTGGGAAGTTTATGGTGCTGCTTTAGAAACTGATGGGAATAAGGAGGTGCTTCAAAAGGTTAATAGCACATTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAGGATCCAAAGATGGTTCTCCAAGCTATTATGAGTCGATGGCTTCCTCTTTCAGATGCAATATTATCAATGGTTGTGAACTGTATGCCTGACCCAATTGCTGCGCAATCATTTCGAATATCACGATTGCTTCCAAAGAGGGATATCATTGATACTGGAGTTGGCATCGATGTGCTAACTGAGGTAGATCTTGTCAAGAAATCCATTGAAGCTTGTGATTCGAGGCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCAGTGCCAGTTAAAATGCTTCCACGGAGGGACAATCACGGTGAGACTACTAATATTTCAGCTGATGATGGGGGAGATGGTGAATCAGATGAGTGTTTCCTTGCATTTGCAAGGGTATTTAGTGGGGTTCTTCATTCTGGGCAGAGAGTTTTTGTGCTTTCAGCTTTATATGACCCAACAAAAGGGGAATCAATGCAAAAGCACATTCAGGAGGCTGAGCTGCATTCATTTTATCTAATGATGGGTCAAGGCTTGAAACCAGTGGCCTCTGTAAAAGCAGGAAACCTTGTAGCAATTCGTGGTCTTAGTCATCACATACTGAAAAGTGCAACTCTTTCAGCCACAAGAAATTGCTGGCCTTTCTCAAGTATGGCATTCCAGGTTTCACCAACTCTTAGAGTTGCGATTGAGCCATCTGATCCTGGAGATATAGGTGCATTGTTGAAAGGCTTAAGGCTTCTAAACAGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCAAGGGGAGAACATGTACTTGCTGCAGCAGGAGAAGTTCATCTTGAGAGATGCATAAAAGATTTGAAGGATAGGTTTGCCAGGGTAAACTTGGAAGTCTCTCCACCTCTTGTATCGTATAAAGAGACAATTGAAGGAGAGGCATCTAGTGTGTTGGATTATTTTAAGGTGTTATCTGAAAGCACAGAGTGTGTTACTAAGAAAACCACAAATGGTAGATGTATCGTCAGAGTGCAGGTAATGAAACTTCCCCCTGCTCTAGCTAAAGTACTTGATGAAAATTCTGACGTACTGGGGGATATTATTGGAGTCAAGTTGGGGCAGAACTATAAAAACTTGGAAACAAAGAGATCAAGTTTGAGAGAAAACGAGAATCCAGTAGAAGCATTAAAAAAACTCGTATTAGATGCAGCGTATAGGAATATATCTTCAAAGGATGACCATGAAGGGAGTCGAGCTGACAAACATAATGCACTGTGGTTGAAGCTTCTTAAGCGAATATGGGCCCTTGGACCTCAGCAGATTGGTCCTAACATTCTGATTAACCCAGATCCTAAAGTAAAGGATTCTGATTGCTCCGTGCTTATTCAGGGGTCGCCTCATGCATCGGAGAGGTTGGGTTTTGTGGACGATTCTTCAAATGGTGACTTGGATTCCGAAACATCTTTGGTAAGTGATACAGCTTCTGTAGCATCATCAGATGGAACTCAGACACTATGCATGGAAGCAGCATCTCTCGAGAACAGTGTTCTATCTGGGTTTCAGCTTGCCACATCAGCTGGGCCCTTATGTGATGAACCTATGTGGGGGTTGGCATTTATTGTTGAGGCCTCTATTTCTTCACCGTCTGGGAATTCAGATGAATCTGAAGCTCCCTTTCAACCAGAGAATAATGCTATCTTTTCTGGACAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCAGAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAGTTGAACACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTTGCTCGAAGGAGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACCGTGCACGCGTATGTGCCAGTTTCAGAAAGCTTTGGTTTTGCAGATGAGTTGAGGAGATGGACTTCTGGAGCAGCAAGTGCTCTTCTAGTGCTTAGCCATTGGGAAGAACTTTGTGAAGATCCTTTTTTTGTCCCGAAGACAGAAGAAGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTGCTTCCCAACACAGCAAGAAAGCTCATTGATACTGTAAGACGGCGTAAGGGTCTTCCAGTGGAAGAAAAAGTCGTGCAGCATGCAACAAAGCAGAGAACTCTGGCTCGGAAAGTATAG 2991 43.2 MAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSILAGSSGEVNDENLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWEVYGAALETDGNKEVLQKVNSTFNLNIPARELSNKDPKMVLQAIMSRWLPLSDAILSMVVNCMPDPIAAQSFRISRLLPKRDIIDTGVGIDVLTEVDLVKKSIEACDSRPEAPFVAFVSKMFAVPVKMLPRRDNHGETTNISADDGGDGESDECFLAFARVFSGVLHSGQRVFVLSALYDPTKGESMQKHIQEAELHSFYLMMGQGLKPVASVKAGNLVAIRGLSHHILKSATLSATRNCWPFSSMAFQVSPTLRVAIEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFARVNLEVSPPLVSYKETIEGEASSVLDYFKVLSESTECVTKKTTNGRCIVRVQVMKLPPALAKVLDENSDVLGDIIGVKLGQNYKNLETKRSSLRENENPVEALKKLVLDAAYRNISSKDDHEGSRADKHNALWLKLLKRIWALGPQQIGPNILINPDPKVKDSDCSVLIQGSPHASERLGFVDDSSNGDLDSETSLVSDTASVASSDGTQTLCMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFIVEASISSPSGNSDESEAPFQPENNAIFSGQVMAAVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHATKQRTLARKV 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10782727 10785717 + Maker00022374 Lcy2g1091 625856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1091 996 Pfam Elongation factor G C-terminus 854 938 IPR000640 -
Lcy2g1091 996 Gene3D Translation factors 309 492 - -
Lcy2g1091 996 SUPERFAMILY EF-G C-terminal domain-like 492 567 IPR035647 -
Lcy2g1091 996 CDD eEF2_snRNP_like_C 857 935 - -
Lcy2g1091 996 Gene3D Elongation Factor G (Translational Gtpase), domain 3 493 570 - -
Lcy2g1091 996 SUPERFAMILY EF-G C-terminal domain-like 857 955 IPR035647 -
Lcy2g1091 996 CDD EF2_II 356 480 - -
Lcy2g1091 996 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 198 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy2g1091 996 Gene3D - 1 169 IPR027417 -
Lcy2g1091 996 Pfam Elongation factor Tu GTP binding domain 6 182 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy2g1091 996 CDD aeEF2_snRNP_like_IV 566 861 - -
Lcy2g1091 996 CDD EF2_snRNP_III 495 566 - -
Lcy2g1091 996 FunFam Elongation factor like GTPase 1 183 292 - -
Lcy2g1091 996 Gene3D Yeast translation eEF2 (G' domain) 183 292 - -
Lcy2g1091 996 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 2 993 - GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Lcy2g1091 996 FunFam Translation elongation factor 2 494 570 - -
Lcy2g1091 996 Gene3D - 590 851 IPR014721 -
Lcy2g1091 996 SMART EFG_C_a 854 943 IPR000640 -
Lcy2g1091 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 307 IPR027417 -
Lcy2g1091 996 SUPERFAMILY Ribosomal protein S5 domain 2-like 569 856 IPR020568 -
Lcy2g1091 996 SUPERFAMILY Translation proteins 347 489 IPR009000 -
Lcy2g1091 996 FunFam Elongation factor like GTPase 1 853 988 - -
Lcy2g1091 996 Gene3D - 853 988 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1091 Lcy-Chr2:10782727 Lcy8g1614 Lcy-Chr8:42708728 1.80E-89 dispersed
Lcy2g1091 Lcy-Chr2:10782727 Lcy8g1615 Lcy-Chr8:42719413 3.64E-88 transposed
Lcy2g1091 Lcy-Chr2:10782727 Lcy8g1632 Lcy-Chr8:42900616 2.44E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1091 K14536 - csv:101220903 1820.44