Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1115 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCCGCTCCAATTGTGGAAGGAGATGCCGTAGCTCCACCAGCTGATCCTGAAGTAGTGGTGGAAGATGATTATTCTGATGAAGAGATTGATGTTGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAGAGCAAGGTTAAGGAAGGGATCGATATTGCGAAGCAGCGACAGTCTCAAGATCAGGCTAGGAGGAAGAAGATGTCAAGGGCACATGATGGGATCTTGAAGTACATGCTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGAAAACCGGTAACCGGGGCATCGGATAATCTTCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAATGGACCGGCTGCCATAGCCAACGAGTACGATGTAGAAGGCGCTGAGGAGGAACCAAACTTTGATGTTCAAGATCGTAAACCTGATAACCATAACTCATTCAACTTGGGGATGGAGAGAATGAGAGAACGGGTGCCCCTTCGGCAACCACCTTATCCAATCAAAGGAGAGGTTGCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTAAACATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGCCCATACAGAACTTCTTCAGAGTTCAGTGGTTCAAATTTTCATGTCAATGAAGTCAAACCAGTTATCTTCCCTCAGTCGTTTGCCCCGCCCAAGCCAGCTCCACCCCCGGTCAGCTCAGTTCCATCTTCCTTCGACTTGTCTAGTTTAGGAGTTCCAGAAGATGGCCAAAAGCTCATCAGTGAGCTCATGTCGATCTACGACACGAACGTCCAAGGCAACAAGAACAACTTAAATACCGGTAACGGTGCCATGACAGAGAGCCAAAATCTTCCTCAGTTGAAGATCCAACCTCAACAAGACGAGTACTTCCGCAATCAAGGTATAATGATCGAGGGAAACTTCTTCGAAGGATCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGATCGGTTTAAGCCAATGAATTCACCTTTCGAGAACAACAACCACCAGCACAACAACAACAACAACTTCCACTTGATGTTCGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGAGCAGCAGCCATCGATACACTGTCGAAACAGCAGGATATCCCATTATGGTATCATTAA 1365 45.35 MMMMFNEMGFCDDMDFLSAPIVEGDAVAPPADPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIANEYDVEGAEEEPNFDVQDRKPDNHNSFNLGMERMRERVPLRQPPYPIKGEVATNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPPPVSSVPSSFDLSSLGVPEDGQKLISELMSIYDTNVQGNKNNLNTGNGAMTESQNLPQLKIQPQQDEYFRNQGIMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNNHQHNNNNNFHLMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYH 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11042375 11044252 - Maker00021871 Lcy2g1115 625880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1115 454 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 154 437 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Lcy2g1115 454 Coils Coil 48 68 - -
Lcy2g1115 454 FunFam Ethylene insensitive 3-like 1 81 160 - -
Lcy2g1115 454 Pfam Ethylene insensitive 3, DNA-binding domain 49 155 IPR047091 GO:0003700(InterPro)
Lcy2g1115 454 Gene3D - 81 164 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1115 K14514 - - csv:101206055 535.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1635 Lcy-Chr10:40748892 Lcy2g1115 Lcy-Chr2:11042375 1.52E-108 dispersed
Lcy2g1115 Lcy-Chr2:11042375 Lcy6g1001 Lcy-Chr6:10730647 4.87E-24 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g1115 . 36 159 EIL Transcription Factor Family AT1G73730 65.9 5.6e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19758 None None None None Lcy TF