Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1115 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCCGCTCCAATTGTGGAAGGAGATGCCGTAGCTCCACCAGCTGATCCTGAAGTAGTGGTGGAAGATGATTATTCTGATGAAGAGATTGATGTTGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAGAGCAAGGTTAAGGAAGGGATCGATATTGCGAAGCAGCGACAGTCTCAAGATCAGGCTAGGAGGAAGAAGATGTCAAGGGCACATGATGGGATCTTGAAGTACATGCTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGAAAACCGGTAACCGGGGCATCGGATAATCTTCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAATGGACCGGCTGCCATAGCCAACGAGTACGATGTAGAAGGCGCTGAGGAGGAACCAAACTTTGATGTTCAAGATCGTAAACCTGATAACCATAACTCATTCAACTTGGGGATGGAGAGAATGAGAGAACGGGTGCCCCTTCGGCAACCACCTTATCCAATCAAAGGAGAGGTTGCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTAAACATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGCCCATACAGAACTTCTTCAGAGTTCAGTGGTTCAAATTTTCATGTCAATGAAGTCAAACCAGTTATCTTCCCTCAGTCGTTTGCCCCGCCCAAGCCAGCTCCACCCCCGGTCAGCTCAGTTCCATCTTCCTTCGACTTGTCTAGTTTAGGAGTTCCAGAAGATGGCCAAAAGCTCATCAGTGAGCTCATGTCGATCTACGACACGAACGTCCAAGGCAACAAGAACAACTTAAATACCGGTAACGGTGCCATGACAGAGAGCCAAAATCTTCCTCAGTTGAAGATCCAACCTCAACAAGACGAGTACTTCCGCAATCAAGGTATAATGATCGAGGGAAACTTCTTCGAAGGATCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGATCGGTTTAAGCCAATGAATTCACCTTTCGAGAACAACAACCACCAGCACAACAACAACAACAACTTCCACTTGATGTTCGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGAGCAGCAGCCATCGATACACTGTCGAAACAGCAGGATATCCCATTATGGTATCATTAA 1365 45.35 MMMMFNEMGFCDDMDFLSAPIVEGDAVAPPADPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIANEYDVEGAEEEPNFDVQDRKPDNHNSFNLGMERMRERVPLRQPPYPIKGEVATNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPPPVSSVPSSFDLSSLGVPEDGQKLISELMSIYDTNVQGNKNNLNTGNGAMTESQNLPQLKIQPQQDEYFRNQGIMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNNHQHNNNNNFHLMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYH 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11042375 11044252 - Maker00021871 Lcy2g1115 625880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1115 454 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 154 437 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Lcy2g1115 454 Coils Coil 48 68 - -
Lcy2g1115 454 FunFam Ethylene insensitive 3-like 1 81 160 - -
Lcy2g1115 454 Pfam Ethylene insensitive 3, DNA-binding domain 49 155 IPR047091 GO:0003700(InterPro)
Lcy2g1115 454 Gene3D - 81 164 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1635 Lcy-Chr10:40748892 Lcy2g1115 Lcy-Chr2:11042375 1.52E-108 dispersed
Lcy2g1115 Lcy-Chr2:11042375 Lcy6g1001 Lcy-Chr6:10730647 4.87E-24 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19758 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1115 K14514 - csv:101206055 535.413