Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1118 ATGGCGGCGGAGACGGTGACCGTGGCGGCAGTGGCGGTGGCGGTCGTGGCGGCCGGGTGGTTGTTATGTGGTGTTGAGGGTAGACAGCCAGTGTTGCATAGGGTTGGAGGAGGAAAAAACACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCATGAGCACTTTTATGTTGGTGATTGGCTTTATTTCGGGTTCGATAAACACATCTACAACGTGCTAGAAGTGAACAAAACGAGCTACGAGAATTGCATCGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGGGATGTGTTCAACCTAACAGAAGCAAAGCCATACTACTTTCTAAGTGGAGGAGGCTTTTGTTTTCAAGGAATGAAGCTTGCTGTCTTTGTTGAAGATTTTCCCACTTCTTCTCCCATTTCACCACCAAAATTACCCAAAATTTCCAATCTTTCTCCATCTATACAACCATTATTATCTTTGCCCTTCTTGCTACTCACCATTGCCTTCACTTCCTTCCTTTAG 519 44.51 MAAETVTVAAVAVAVVAAGWLLCGVEGRQPVLHRVGGGKNTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYENCIDKDFIFNITRGGRDVFNLTEAKPYYFLSGGGFCFQGMKLAVFVEDFPTSSPISPPKLPKISNLSPSIQPLLSLPFLLLTIAFTSFL 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11072245 11073664 + Maker00022470 Lcy2g1118 625883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1118 172 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055(InterPro)
Lcy2g1118 172 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055(InterPro)
Lcy2g1118 172 PANTHER BLUE COPPER PROTEIN 15 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lcy2g1118 172 FunFam Lamin-like protein 29 132 - -
Lcy2g1118 172 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Lcy2g1118 172 Gene3D - 31 133 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1118 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0682 Lcy-Chr10:20093575 Lcy2g1118 Lcy-Chr2:11072245 1.23E-33 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy8g2041 . 48 263 Phytocyanin Superfamily AT1G08500 54.1 4.6e-56 215.3
Lcy2g1118 . 29 144 Phytocyanin Superfamily AT2G27035 57.8 6.9e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49