Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1135 ATGGCGGGAAAAATCGAAGGAGCTTTAGATTCGATGGTCGTAGAAGGGAAGGGAGAAACAGTGGAAGCGATAGACACGATTGAGGAAGAGTCATCTCAATGCAAGAGAGTTGGAGAAGAAAGCAGAAGACACAAGTTGATCGGGGCTAAAGAGCACAAAGACCTGTCCAGTCTTCAACAACCGCGGCAAAGGAGAAGCGCAACGACGAAGCTAATGCTACATCCGAGAAGGAATCAGGCTGAACGCAAGTTTGAATATTTGAGTGAGAACCAAATCCAGGCACTGCTGACAGTGGGGTTTCTCGAACCTGAAGACCACAAACATCAAGAAATGAAGAGAATTTCCTTATGCCTGGAGAGAGAGAGAGGGGCTAAAGTTTGCTCTATTTACATCTTGGACATTCATGTGTTCTATACTGTTATCTCTGCTATTTGGAGTTTCTTAATTGGGGCAAGAGATCGTCTTGGAGAGATTAGATCACTGGAAGCCGTTCATAAACTGTTTGAGCAGTTTCCTGAAGCTTTTATGAACACTCTACATGTTCCTCTTCCAGAAAGGATTTCTAATCGTTCTTCAAGTCAGATTGACGTGTCTGTAGTGTCATTTTGTCCTCATATCAGCCTAGGACATGCTACCAGAAAATTGGCGTATGCATGCATTGTAGGTTTTAAAATGCTATTGCAACTTGAGATTATATTTGCTGATGTTTGTGTCAAGGTTGTTGAGAAAGAGAAGTTTGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTGCTTCAAATGCCTAAAAACAAGGGTAATCTTCCCATGGTTCAGTGGCCCCTTTTTCTTCTTGCCAGCAAGATATTTCTAGCTAAGGATATTGCTGTTGAGAAACGAGATTCGCAATACGAGTTGTGGGAGCGTATTTCAAGAGATGACTATATGAAATATGCAGTACAGGAATGCTACCATGCAATTAAGCTTATCTTAACAGAATTACTGGTCGGGGAAGGAAGGATGTGGGTTGAAAGGGTATTTGAAGACATTCAAACTAGCGTAGCTAGCAATTCCATTCTAAATGACTTCCAGCTAAATAAGCTGCCACTTGTGATTACAAGAGTAACTGCTCTGACGGGTATTCTGGAATCCAATGTTGGTCGGTATTTACTTGAGAAAAGCATGAGGGACTTCTTGGGAGGGATAGGTAAAGGAAAAGGGTCTAACCTCTTGAATTTTGAGTGTGGTGATGAAGCCAGGCATTGTGTAGCTTGGCCTAGAGTTTGTAGTTCAATGATCGAGGAGTCATTGCCTCATCCGCCCTTTAGGATAAAGGGACCTGTTTTTGTGGTGGTCAAAGTCATTGTATTTTTTACTCATGTATCTTCTGTTTTTCACTTTGATTATGACATTGTACAGAAAGAGCCAGAAACTTCGGAACTGGAAAAAGGTGCTGTTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATATCCTTTTCGGTGACAAGAGGGGGCACTATGAAACATGGAACATATTGGTAAAAGCCAGAAATGAAGGTCGCCTGTTTACAAAGTTGAATTGGCCCAAAGATCCAGAATTGAAGGCACAAGTCAAAAGATTGCATTCGCTGTTAACCATTAAAGATTCAGCTTCAAATATTCCAGTTAATCTTGAGGCCAGACGTAGACTGCAATTCTTTACAAATTCACTTTTCATGAGGATGCCAACCCCAAAACCTGTTCGTCAGATGCTTTCCTTCAGGTAG 1803 41.43 MAGKIEGALDSMVVEGKGETVEAIDTIEEESSQCKRVGEESRRHKLIGAKEHKDLSSLQQPRQRRSATTKLMLHPRRNQAERKFEYLSENQIQALLTVGFLEPEDHKHQEMKRISLCLERERGAKVCSIYILDIHVFYTVISAIWSFLIGARDRLGEIRSLEAVHKLFEQFPEAFMNTLHVPLPERISNRSSSQIDVSVVSFCPHISLGHATRKLAYACIVGFKMLLQLEIIFADVCVKVVEKEKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPKNKGNLPMVQWPLFLLASKIFLAKDIAVEKRDSQYELWERISRDDYMKYAVQECYHAIKLILTELLVGEGRMWVERVFEDIQTSVASNSILNDFQLNKLPLVITRVTALTGILESNVGRYLLEKSMRDFLGGIGKGKGSNLLNFECGDEARHCVAWPRVCSSMIEESLPHPPFRIKGPVFVVVKVIVFFTHVSSVFHFDYDIVQKEPETSELEKGAVKAVQDLYDVVHHDILFGDKRGHYETWNILVKARNEGRLFTKLNWPKDPELKAQVKRLHSLLTIKDSASNIPVNLEARRRLQFFTNSLFMRMPTPKPVRQMLSFR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11339145 11349342 - Maker00022279 Lcy2g1135 625900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1135 600 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 126 599 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Lcy2g1135 600 MobiDBLite consensus disorder prediction 50 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1135 K11000 - - csv:101216435 371.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1135 Lcy-Chr2:11339145 Lcy2g1151 Lcy-Chr2:11496659 2.95E-41 dispersed
Lcy2g1135 Lcy-Chr2:11339145 Lcy3g1948 Lcy-Chr3:46649362 2.21E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0192 . 1 1034 Cell Wall Biosynthesis AT5G17420 85.0 0.0e+00 1836.2
Lcy3g1908 . 17 1091 Cell Wall Biosynthesis AT5G17420 67.1 0.0e+00 1437.2
Lcy1g1957 . 9 1051 Cell Wall Biosynthesis AT5G17420 68.0 0.0e+00 1436.4
Lcy1g1116 . 1 1090 Cell Wall Biosynthesis AT5G17420 64.5 0.0e+00 1433.7
Lcy9g1827 . 1 1083 Cell Wall Biosynthesis AT5G17420 65.7 0.0e+00 1433.7
Lcy9g0447 . 1 1088 Cell Wall Biosynthesis AT5G17420 62.7 0.0e+00 1411.7
Lcy5g1811 . 67 1059 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1280.0
Lcy9g2389 . 1 1002 Cell Wall Biosynthesis AT5G17420 56.4 0.0e+00 1158.3
Lcy3g1447 . 2 1034 Cell Wall Biosynthesis AT5G17420 52.6 1.9e-298 1022.7
Lcy9g2392 . 592 697 Cell Wall Biosynthesis AT5G17420 57.4 2.8e-36 151.8
Lcy2g1134 . 3 814 Cell Wall Biosynthesis AT3G07160 73.7 0.0e+00 1223.0
Lcy2g0083 . 1 564 Cell Wall Biosynthesis AT3G07160 69.7 8.3e-244 842.0
Lcy2g0085 . 4 629 Cell Wall Biosynthesis AT3G07160 54.3 2.3e-193 674.5
Lcy4g0778 . 5 543 Cell Wall Biosynthesis AT3G07160 56.2 2.5e-176 617.8
Lcy3g1947 . 249 754 Cell Wall Biosynthesis AT3G07160 56.4 2.8e-159 561.2
Lcy2g1149 . 61 468 Cell Wall Biosynthesis AT3G07160 63.5 2.8e-151 534.6
Lcy2g1135 . 124 599 Cell Wall Biosynthesis AT3G07160 50.4 9.5e-115 413.3
Lcy2g1137 . 96 252 Cell Wall Biosynthesis AT3G07160 69.0 5.3e-57 221.5
Lcy2g0086 . 2 184 Cell Wall Biosynthesis AT3G07160 55.0 2.2e-55 216.1
Lcy2g0084 . 106 233 Cell Wall Biosynthesis AT3G07160 64.8 5.5e-38 158.3
Lcy2g0088 . 1 161 Cell Wall Biosynthesis AT3G07160 54.0 8.0e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020151 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 4