Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1157 ATGGAAGACGAAGCTTCCTCCAGCTTCCTTTCCCTCAACAAGACCCCTCTCCTCACAGACGAAGTTTCAGATTCTAATTTTTCAGATTACGCCATACCTGCTGCCAAGCGGCCGAGATTGGACCACGATCTTAACGATGTCGCCGCCGTCGGAAAATTCAAAGGCGTTGTGCCGCAACAGAACGGCCGTTGGGGAGCGCAGATCTACGCGAACCACCAGAGGATCTGGCTAGGCACCTTCAAGTCGGAGAAAGACGCCGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGAACCAGAGATTCCCACCGGAATTTTCCCTGGACTCGCCGGTCAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCTGTTTTGAGCATGATTAAAGATGGATCGTATTCCTCGAAATTTTCCGCCTATTTACGAACGAAATCTCAAATTTGCGACTCGAACTCACAGAACCCCCAAAATTTCGACAATGCCGACGGCGATGGCCATTTCTCTTGCAGCCATCTGTTCCAAAAGGAATTAACACCGAGTGACGTCGGCAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGACAGCGCAGAGGAGAATGGCGACGACATCGAAATTGTCTTCTACGATACGTCGATGAAGACATGGAAGTTCCGATACTGTTACTGGAGAAGCAGCCAGAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATCATCACGTTTTACACATACGAGAGCTGCAGAAGAGACGAAAATGGCGGAACATTGAACTTCATCGACGTGATCTACAAGAAAACGGAAGATGATCAGAGCGAGAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTATGAAGAATGAGAAGTTGCAGAGGGAATTAGGGCTTGATCGGGAGAAAGATTGTGAGAAGAAGAAGAAGAAGGAGATTTTGAACAGTGAATTGAAGAACCCTAATGATGAAAATGTTGGGGAAAAGCGAGTAAGACTTTTTGGAGTACATATTGATTGA 1074 47.3 MEDEASSSFLSLNKTPLLTDEVSDSNFSDYAIPAAKRPRLDHDLNDVAAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRRSIEEPNFQIKFSTDAVLSMIKDGSYSSKFSAYLRTKSQICDSNSQNPQNFDNADGDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISDSAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCRRDENGGTLNFIDVIYKKTEDDQSESSCLAAEKESMKNEKLQRELGLDREKDCEKKKKKEILNSELKNPNDENVGEKRVRLFGVHID 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11588115 11589188 + Maker00022010 Lcy2g1157 625922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1157 357 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1157 357 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677(InterPro)
Lcy2g1157 357 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Lcy2g1157 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 356 IPR044800 GO:0003700(InterPro)
Lcy2g1157 357 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1157 357 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Lcy2g1157 357 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1157 357 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Lcy2g1157 357 Gene3D - 164 293 IPR015300 -
Lcy2g1157 357 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Lcy2g1157 357 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Lcy2g1157 357 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Lcy2g1157 357 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0169 Lcy-Chr2:1337994 Lcy2g1157 Lcy-Chr2:11588115 1.22E-102 dispersed
Lcy2g1157 Lcy-Chr2:11588115 Lcy7g0437 Lcy-Chr7:3855395 2.95E-53 dispersed
Lcy2g1157 Lcy-Chr2:11588115 Lcy10g0904 Lcy-Chr10:28501189 6.10E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19760 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1157 K09287 - csv:101219913 598.586