Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1157 ATGGAAGACGAAGCTTCCTCCAGCTTCCTTTCCCTCAACAAGACCCCTCTCCTCACAGACGAAGTTTCAGATTCTAATTTTTCAGATTACGCCATACCTGCTGCCAAGCGGCCGAGATTGGACCACGATCTTAACGATGTCGCCGCCGTCGGAAAATTCAAAGGCGTTGTGCCGCAACAGAACGGCCGTTGGGGAGCGCAGATCTACGCGAACCACCAGAGGATCTGGCTAGGCACCTTCAAGTCGGAGAAAGACGCCGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGAACCAGAGATTCCCACCGGAATTTTCCCTGGACTCGCCGGTCAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCTGTTTTGAGCATGATTAAAGATGGATCGTATTCCTCGAAATTTTCCGCCTATTTACGAACGAAATCTCAAATTTGCGACTCGAACTCACAGAACCCCCAAAATTTCGACAATGCCGACGGCGATGGCCATTTCTCTTGCAGCCATCTGTTCCAAAAGGAATTAACACCGAGTGACGTCGGCAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGACAGCGCAGAGGAGAATGGCGACGACATCGAAATTGTCTTCTACGATACGTCGATGAAGACATGGAAGTTCCGATACTGTTACTGGAGAAGCAGCCAGAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATCATCACGTTTTACACATACGAGAGCTGCAGAAGAGACGAAAATGGCGGAACATTGAACTTCATCGACGTGATCTACAAGAAAACGGAAGATGATCAGAGCGAGAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTATGAAGAATGAGAAGTTGCAGAGGGAATTAGGGCTTGATCGGGAGAAAGATTGTGAGAAGAAGAAGAAGAAGGAGATTTTGAACAGTGAATTGAAGAACCCTAATGATGAAAATGTTGGGGAAAAGCGAGTAAGACTTTTTGGAGTACATATTGATTGA 1074 47.3 MEDEASSSFLSLNKTPLLTDEVSDSNFSDYAIPAAKRPRLDHDLNDVAAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRRSIEEPNFQIKFSTDAVLSMIKDGSYSSKFSAYLRTKSQICDSNSQNPQNFDNADGDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISDSAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCRRDENGGTLNFIDVIYKKTEDDQSESSCLAAEKESMKNEKLQRELGLDREKDCEKKKKKEILNSELKNPNDENVGEKRVRLFGVHID 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11588115 11589188 + Maker00022010 Lcy2g1157 625922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1157 357 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1157 357 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677(InterPro)
Lcy2g1157 357 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Lcy2g1157 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 356 IPR044800 GO:0003700(InterPro)
Lcy2g1157 357 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1157 357 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Lcy2g1157 357 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1157 357 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Lcy2g1157 357 Gene3D - 164 293 IPR015300 -
Lcy2g1157 357 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Lcy2g1157 357 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Lcy2g1157 357 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Lcy2g1157 357 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1157 K09287 - - csv:101219913 598.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0169 Lcy-Chr2:1337994 Lcy2g1157 Lcy-Chr2:11588115 1.22E-102 dispersed
Lcy2g1157 Lcy-Chr2:11588115 Lcy7g0437 Lcy-Chr7:3855395 2.95E-53 dispersed
Lcy2g1157 Lcy-Chr2:11588115 Lcy10g0904 Lcy-Chr10:28501189 6.10E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g0449 . 1 150 RAV Transcription Factor Family AT2G36080 66.7 1.2e-53 206.8
Lcy6g0876 . 57 183 RAV Transcription Factor Family AT2G36080 61.2 8.4e-42 167.5
Lcy4g1005 . 87 199 RAV Transcription Factor Family AT2G36080 69.0 5.4e-41 164.9
Lcy12g1482 . 39 172 RAV Transcription Factor Family AT2G36080 60.6 3.5e-40 162.2
Lcy7g0437 . 183 312 RAV Transcription Factor Family AT2G36080 58.8 7.3e-38 154.5
Lcy12g1482 . 43 161 RAV Transcription Factor Family AT2G46870 87.5 4.3e-57 219.2
Lcy4g1005 . 87 327 RAV Transcription Factor Family AT2G46870 51.4 1.8e-55 213.8
Lcy6g0876 . 57 192 RAV Transcription Factor Family AT2G46870 74.5 4.5e-54 209.1
Lcy7g0437 . 189 300 RAV Transcription Factor Family AT2G46870 69.0 3.1e-39 159.8
Lcy5g0449 . 35 147 RAV Transcription Factor Family AT2G46870 66.4 4.1e-39 159.5
Lcy10g0904 . 172 278 RAV Transcription Factor Family AT2G46870 69.1 6.5e-37 152.1
Lcy5g0449 . 27 150 RAV Transcription Factor Family AT3G11580 65.9 3.1e-44 176.0
Lcy4g1005 . 84 199 RAV Transcription Factor Family AT3G11580 64.6 2.7e-40 162.9
Lcy12g1482 . 39 154 RAV Transcription Factor Family AT3G11580 61.4 2.3e-39 159.8
Lcy6g0876 . 57 166 RAV Transcription Factor Family AT3G11580 63.6 1.1e-38 157.5
Lcy12g1482 . 28 161 RAV Transcription Factor Family AT3G61970 76.6 8.7e-55 211.5
Lcy4g1005 . 84 327 RAV Transcription Factor Family AT3G61970 52.8 3.7e-53 206.1
Lcy5g0449 . 35 146 RAV Transcription Factor Family AT3G61970 67.0 1.4e-41 167.5
Lcy7g0437 . 189 297 RAV Transcription Factor Family AT3G61970 70.0 2.3e-39 160.2
Lcy10g0904 . 168 278 RAV Transcription Factor Family AT3G61970 67.0 1.4e-36 151.0
Lcy12g1482 . 44 164 RAV Transcription Factor Family AT4G01500 66.4 2.9e-43 173.3
Lcy4g1005 . 83 198 RAV Transcription Factor Family AT4G01500 66.7 9.4e-42 168.3
Lcy6g0876 . 58 181 RAV Transcription Factor Family AT4G01500 61.1 1.5e-39 161.0
Lcy6g0876 . 58 166 RAV Transcription Factor Family AT5G06250 69.7 2.9e-41 166.4
Lcy4g1005 . 88 196 RAV Transcription Factor Family AT5G06250 68.1 4.9e-41 165.6
Lcy12g1482 . 44 152 RAV Transcription Factor Family AT5G06250 65.5 9.2e-40 161.4
Lcy10g0904 . 169 281 RAV Transcription Factor Family AT5G06250 66.9 5.6e-37 152.1
Lcy7g0437 . 189 297 RAV Transcription Factor Family AT5G06250 62.4 9.6e-37 151.4
Lcy2g0169 . 79 377 RAV Transcription Factor Family AT1G50680 53.5 3.1e-85 312.8
Lcy2g1157 . 52 357 RAV Transcription Factor Family AT1G50680 51.2 1.4e-77 287.3
Lcy2g0169 . 79 378 RAV Transcription Factor Family AT1G51120 53.8 6.6e-86 315.1
Lcy2g1157 . 52 266 RAV Transcription Factor Family AT1G51120 63.2 3.3e-77 286.2
Lcy7g0437 . 33 353 RAV Transcription Factor Family AT1G13260 66.7 1.9e-106 383.3
Lcy10g0904 . 1 325 RAV Transcription Factor Family AT1G13260 59.5 4.2e-93 339.0
Lcy12g1482 . 45 158 RAV Transcription Factor Family AT1G13260 68.7 8.5e-38 155.2
Lcy4g1005 . 89 206 RAV Transcription Factor Family AT1G13260 65.9 2.5e-37 153.7
Lcy5g0449 . 36 144 RAV Transcription Factor Family AT1G13260 67.9 1.6e-36 151.0
Lcy6g0876 . 55 166 RAV Transcription Factor Family AT1G13260 67.3 1.6e-36 151.0
Lcy7g0437 . 26 351 RAV Transcription Factor Family AT3G25730 62.7 7.6e-100 361.3
Lcy10g0904 . 39 323 RAV Transcription Factor Family AT3G25730 61.0 3.1e-85 312.8
Lcy5g0449 . 38 144 RAV Transcription Factor Family AT3G25730 67.3 7.0e-37 152.1
Lcy7g0437 . 1 355 RAV Transcription Factor Family AT1G68840 62.4 8.8e-115 411.0
Lcy10g0904 . 1 327 RAV Transcription Factor Family AT1G68840 57.5 2.4e-96 349.7
Lcy4g1005 . 88 201 RAV Transcription Factor Family AT1G68840 68.1 1.3e-38 157.9
Lcy12g1482 . 44 152 RAV Transcription Factor Family AT1G68840 70.3 3.0e-38 156.8
Lcy5g0449 . 35 144 RAV Transcription Factor Family AT1G68840 68.2 2.5e-37 153.7
Lcy6g0876 . 58 166 RAV Transcription Factor Family AT1G68840 67.6 7.4e-37 152.1
Lcy7g0437 . 26 351 RAV Transcription Factor Family AT3G25730 62.7 7.6e-100 361.3
Lcy10g0904 . 39 323 RAV Transcription Factor Family AT3G25730 61.0 3.1e-85 312.8
Lcy5g0449 . 38 144 RAV Transcription Factor Family AT3G25730 67.3 7.0e-37 152.1
Lcy2g0169 . 79 378 RAV Transcription Factor Family AT1G51120 53.8 6.6e-86 315.1
Lcy2g1157 . 52 266 RAV Transcription Factor Family AT1G51120 63.2 3.3e-77 286.2
Lcy5g0449 . 27 150 RAV Transcription Factor Family AT3G11580 65.9 3.1e-44 176.0
Lcy4g1005 . 84 199 RAV Transcription Factor Family AT3G11580 64.6 2.7e-40 162.9
Lcy12g1482 . 39 154 RAV Transcription Factor Family AT3G11580 61.4 2.3e-39 159.8
Lcy6g0876 . 57 166 RAV Transcription Factor Family AT3G11580 63.6 1.1e-38 157.5
Lcy12g1482 . 44 164 RAV Transcription Factor Family AT4G01500 66.4 2.9e-43 173.3
Lcy4g1005 . 83 198 RAV Transcription Factor Family AT4G01500 66.7 9.4e-42 168.3
Lcy6g0876 . 58 181 RAV Transcription Factor Family AT4G01500 61.1 1.5e-39 161.0
Lcy5g0449 . 1 150 RAV Transcription Factor Family AT2G36080 66.7 1.2e-53 206.8
Lcy6g0876 . 57 183 RAV Transcription Factor Family AT2G36080 61.2 8.4e-42 167.5
Lcy4g1005 . 87 199 RAV Transcription Factor Family AT2G36080 69.0 5.4e-41 164.9
Lcy12g1482 . 39 172 RAV Transcription Factor Family AT2G36080 60.6 3.5e-40 162.2
Lcy7g0437 . 183 312 RAV Transcription Factor Family AT2G36080 58.8 7.3e-38 154.5
Lcy6g0876 . 58 166 RAV Transcription Factor Family AT5G06250 69.7 2.9e-41 166.4
Lcy4g1005 . 88 196 RAV Transcription Factor Family AT5G06250 68.1 4.9e-41 165.6
Lcy12g1482 . 44 152 RAV Transcription Factor Family AT5G06250 65.5 9.2e-40 161.4
Lcy10g0904 . 169 281 RAV Transcription Factor Family AT5G06250 66.9 5.6e-37 152.1
Lcy7g0437 . 189 297 RAV Transcription Factor Family AT5G06250 62.4 9.6e-37 151.4
Lcy12g1482 . 43 161 RAV Transcription Factor Family AT2G46870 87.5 4.3e-57 219.2
Lcy4g1005 . 87 327 RAV Transcription Factor Family AT2G46870 51.4 1.8e-55 213.8
Lcy6g0876 . 57 192 RAV Transcription Factor Family AT2G46870 74.5 4.5e-54 209.1
Lcy7g0437 . 189 300 RAV Transcription Factor Family AT2G46870 69.0 3.1e-39 159.8
Lcy5g0449 . 35 147 RAV Transcription Factor Family AT2G46870 66.4 4.1e-39 159.5
Lcy10g0904 . 172 278 RAV Transcription Factor Family AT2G46870 69.1 6.5e-37 152.1
Lcy2g0169 . 79 377 RAV Transcription Factor Family AT1G50680 53.5 3.1e-85 312.8
Lcy2g1157 . 52 357 RAV Transcription Factor Family AT1G50680 51.2 1.4e-77 287.3
Lcy12g1482 . 28 161 RAV Transcription Factor Family AT3G61970 76.6 8.7e-55 211.5
Lcy4g1005 . 84 327 RAV Transcription Factor Family AT3G61970 52.8 3.7e-53 206.1
Lcy5g0449 . 35 146 RAV Transcription Factor Family AT3G61970 67.0 1.4e-41 167.5
Lcy7g0437 . 189 297 RAV Transcription Factor Family AT3G61970 70.0 2.3e-39 160.2
Lcy10g0904 . 168 278 RAV Transcription Factor Family AT3G61970 67.0 1.4e-36 151.0
Lcy7g0437 . 33 353 RAV Transcription Factor Family AT1G13260 66.7 1.9e-106 383.3
Lcy10g0904 . 1 325 RAV Transcription Factor Family AT1G13260 59.5 4.2e-93 339.0
Lcy12g1482 . 45 158 RAV Transcription Factor Family AT1G13260 68.7 8.5e-38 155.2
Lcy4g1005 . 89 206 RAV Transcription Factor Family AT1G13260 65.9 2.5e-37 153.7
Lcy5g0449 . 36 144 RAV Transcription Factor Family AT1G13260 67.9 1.6e-36 151.0
Lcy6g0876 . 55 166 RAV Transcription Factor Family AT1G13260 67.3 1.6e-36 151.0
Lcy7g0437 . 1 355 RAV Transcription Factor Family AT1G68840 62.4 8.8e-115 411.0
Lcy10g0904 . 1 327 RAV Transcription Factor Family AT1G68840 57.5 2.4e-96 349.7
Lcy4g1005 . 88 201 RAV Transcription Factor Family AT1G68840 68.1 1.3e-38 157.9
Lcy12g1482 . 44 152 RAV Transcription Factor Family AT1G68840 70.3 3.0e-38 156.8
Lcy5g0449 . 35 144 RAV Transcription Factor Family AT1G68840 68.2 2.5e-37 153.7
Lcy6g0876 . 58 166 RAV Transcription Factor Family AT1G68840 67.6 7.4e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19760 None None None None Lcy TF