Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1159 ATGAGGCCTGTCAAACGCGAACCCGTCGCCAGCAGCCGCAGTAATCGGAGTACAGGCGGCAGCGCCGACGATGCTGCGATTTTAAGGGATGTTAAGCGGGAGAGGGTTGCTAGGGAGCGAGAGAACTCCCACGAGGACAACACCACTGAAGAAGAAGAGGGTCAGCAAGACTTGTCGAAGCGGCGGGTCCTTCGGTCTCGGTACCTCGCGGTCATTCATGAGATTAGTGAAAGGAGAGAGGATTTGTCGAAGGATTTGGATAAGTTTAATGTTATCATCAGTGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCAAGGGAACAAGTTGCAGATGCAGAAGCGTTGCAGGATATTGCAAACTCCCTCGTGACATCTATTAGGTCCCAGTCCAATGAAGGTGTTACTCCATCAGATTTTGTTAGTTGTCTGCTCAGAGAGTTTGCTGACATTAACGTAACATCTAGAGAAAACGATCTGGTTTCTGTCAGTTGGAAAGATATTGGACTCAGTGTTTCGTCTATTTTCATGAATGGCCATGGGTGCCGCACCATGCTTGGACCTATGAGTACTCAGTTGAAGCAGCGAAAGACTGTTACCAGGAAGCGTTCCAGGCCTACTGAAAGTTCTAGACCTGCAGAGGTTGAAGAAAATGCGTCTGAAGAAAAAACAGATACAGATAAGAACATGAGCATCATGTTTCTGATTTTGAGGAGGAATAAAACCGTTAAACTTGAACATTTGATATTGAATAGAAAGTCTTTTGCACAGACGGTAGAGAACTTATTTGCTCTATCCTTTCTGGTTAAGGATGGTCGTGCTGAGATAACTATTGATAAAAACGGCCGTCATCTTGTGTCACCGAAGAATGCCCCTGCCCATAGTGCTATTATGTCACATGAAGTTAATTACAGTCATTTTGTATTCAGATTCGATTTCAAGGATTGGAAGCTGATGATGGATATGGTACCAGTTGGAGAGGAGCTGATGCCTCACAGGAATTTTCTGAATTCAGCACCAATGCCCCAAGCAGAGGCATCAGGGGATGATTCCGAAGCAGCAGCATTGCCTACCACGCCAATTCGAAAGCTGTCAAGAAATCGAGGTTTAGTTATGCAGTCTGTTGTTGAGGATTCTCCTGATAATGGCACTGATTCAGGACCAACTGCAATTTTGAGGTGCAAGAGAAAGCTTAGTCAAGGTTTAGTAAATTAG 1215 45.19 MRPVKREPVASSRSNRSTGGSADDAAILRDVKRERVARERENSHEDNTTEEEEGQQDLSKRRVLRSRYLAVIHEISERREDLSKDLDKFNVIISEVEKLHEQVQKPREQVADAEALQDIANSLVTSIRSQSNEGVTPSDFVSCLLREFADINVTSRENDLVSVSWKDIGLSVSSIFMNGHGCRTMLGPMSTQLKQRKTVTRKRSRPTESSRPAEVEENASEEKTDTDKNMSIMFLILRRNKTVKLEHLILNRKSFAQTVENLFALSFLVKDGRAEITIDKNGRHLVSPKNAPAHSAIMSHEVNYSHFVFRFDFKDWKLMMDMVPVGEELMPHRNFLNSAPMPQAEASGDDSEAAALPTTPIRKLSRNRGLVMQSVVEDSPDNGTDSGPTAILRCKRKLSQGLVN 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11611646 11614698 - Maker00022462 Lcy2g1159 625924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1159 404 Pfam Nse4 C-terminal 243 330 IPR014854 -
Lcy2g1159 404 MobiDBLite consensus disorder prediction 1 59 - -
Lcy2g1159 404 MobiDBLite consensus disorder prediction 26 59 - -
Lcy2g1159 404 MobiDBLite consensus disorder prediction 340 360 - -
Lcy2g1159 404 PANTHER UNCHARACTERIZED 34 370 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(PANTHER)|GO:0006281(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Lcy2g1159 404 MobiDBLite consensus disorder prediction 202 224 - -
Lcy2g1159 404 MobiDBLite consensus disorder prediction 190 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1159 K22825 - - csv:101220149 653.669
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g1159 . 66 399 Non-SMC Element family AT1G51130 56.6 1.4e-95 347.4
Lcy2g1159 . 66 379 Non-SMC Element family AT3G20760 51.2 2.6e-80 296.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35