Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1215 ATGCAGTCAAAATCTGAAACCAATAATCAGCTTGAATCTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGGTACAATCCTATTCCATTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGACGGCCAGTCTGTGTCTAATAACGACGTAAATGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCACATTCCGCTGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCCGCTTTACCAGCTATGCACGGTGAATGTCTGACACAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCATGTGCATCAAATCCATATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCATTGGGCTATCCTATGGTTGGAGCGCCACATCCTAGAATGCCGTTGCCCATTGAGATAGCACAGGACCCCGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCACGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTCGCCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAACGTAAACCAGAGTGGTTACCACCTAAACGATGGTTCTGAACAGCAGAATGGAAGCTCCTTGACGAACAAGGCCTCTGAGTAG 816 46.45 MQSKSETNNQLESDPNGAPSTSIYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSALPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHPRMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKNEADGKEMHSDNVNQSGYHLNDGSEQQNGSSLTNKASE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12594737 12600295 + Maker00021868 Lcy2g1215 625980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1215 271 MobiDBLite consensus disorder prediction 208 271 - -
Lcy2g1215 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 MobiDBLite consensus disorder prediction 228 242 - -
Lcy2g1215 271 MobiDBLite consensus disorder prediction 208 227 - -
Lcy2g1215 271 MobiDBLite consensus disorder prediction 243 271 - -
Lcy2g1215 271 Gene3D - 173 235 - -
Lcy2g1215 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 261 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy2g1215 271 MobiDBLite consensus disorder prediction 39 103 - -
Lcy2g1215 271 MobiDBLite consensus disorder prediction 1 20 - -
Lcy2g1215 271 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 MobiDBLite consensus disorder prediction 1 22 - -
Lcy2g1215 271 MobiDBLite consensus disorder prediction 42 69 - -
Lcy2g1215 271 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lcy2g1215 271 MobiDBLite consensus disorder prediction 84 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1215 K08064 - - csv:101212860 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1215 Lcy-Chr2:12594737 Lcy4g2252 Lcy-Chr4:49061923 6.67E-30 dispersed
Lcy2g1215 Lcy-Chr2:12594737 Lcy3g1906 Lcy-Chr3:46293655 2.38E-43 wgd
Lcy2g1215 Lcy-Chr2:12594737 Lcy8g2090 Lcy-Chr8:47081214 5.79E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g2090 . 1 273 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.3 4.1e-59 225.7
Lcy2g1215 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 5.2e-47 185.7
Lcy1g0127 . 26 177 CCAAT-HAP2 Transcription Factor Family AT2G34720 55.2 5.3e-38 154.8
Lcy1g0127 . 32 177 CCAAT-HAP2 Transcription Factor Family AT1G30500 62.3 2.4e-42 169.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19761 None None None None Lcy TF