Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g1215 | ATGCAGTCAAAATCTGAAACCAATAATCAGCTTGAATCTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGGTACAATCCTATTCCATTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGACGGCCAGTCTGTGTCTAATAACGACGTAAATGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCACATTCCGCTGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCCGCTTTACCAGCTATGCACGGTGAATGTCTGACACAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCATGTGCATCAAATCCATATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCATTGGGCTATCCTATGGTTGGAGCGCCACATCCTAGAATGCCGTTGCCCATTGAGATAGCACAGGACCCCGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCACGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTCGCCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAACGTAAACCAGAGTGGTTACCACCTAAACGATGGTTCTGAACAGCAGAATGGAAGCTCCTTGACGAACAAGGCCTCTGAGTAG | 816 | 46.45 | MQSKSETNNQLESDPNGAPSTSIYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSALPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHPRMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKNEADGKEMHSDNVNQSGYHLNDGSEQQNGSSLTNKASE | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 12594737 | 12600295 | + | Maker00021868 | Lcy2g1215 | 625980 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 208 | 271 | - | - | |
Lcy2g1215 | 271 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 176 | 230 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 228 | 242 | - | - | |
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 208 | 227 | - | - | |
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 243 | 271 | - | - | |
Lcy2g1215 | 271 | Gene3D | - | 173 | 235 | - | - | |
Lcy2g1215 | 271 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 16 | 261 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 39 | 103 | - | - | |
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lcy2g1215 | 271 | PRINTS | CCAAT-binding transcription factor subunit B signature | 176 | 198 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g1215 | 271 | PRINTS | CCAAT-binding transcription factor subunit B signature | 207 | 230 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
Lcy2g1215 | 271 | ProSiteProfiles | NF-YA/HAP2 family profile. | 173 | 233 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g1215 | 271 | SMART | cbf3 | 172 | 233 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g1215 | 271 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 178 | 198 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Lcy2g1215 | 271 | MobiDBLite | consensus disorder prediction | 84 | 103 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g1215 | Lcy-Chr2:12594737 | Lcy4g2252 | Lcy-Chr4:49061923 | 6.67E-30 | dispersed | |
Lcy2g1215 | Lcy-Chr2:12594737 | Lcy3g1906 | Lcy-Chr3:46293655 | 2.38E-43 | wgd | |
Lcy2g1215 | Lcy-Chr2:12594737 | Lcy8g2090 | Lcy-Chr8:47081214 | 5.79E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19761 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g1215 | K08064 | - | csv:101212860 | 478.404 |