Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1215 ATGCAGTCAAAATCTGAAACCAATAATCAGCTTGAATCTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGGTACAATCCTATTCCATTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGACGGCCAGTCTGTGTCTAATAACGACGTAAATGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCACATTCCGCTGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCCGCTTTACCAGCTATGCACGGTGAATGTCTGACACAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCATGTGCATCAAATCCATATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCATTGGGCTATCCTATGGTTGGAGCGCCACATCCTAGAATGCCGTTGCCCATTGAGATAGCACAGGACCCCGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCACGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTCGCCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAACGTAAACCAGAGTGGTTACCACCTAAACGATGGTTCTGAACAGCAGAATGGAAGCTCCTTGACGAACAAGGCCTCTGAGTAG 816 46.45 MQSKSETNNQLESDPNGAPSTSIYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSALPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHPRMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKNEADGKEMHSDNVNQSGYHLNDGSEQQNGSSLTNKASE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12594737 12600295 + Maker00021868 Lcy2g1215 625980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1215 271 MobiDBLite consensus disorder prediction 208 271 - -
Lcy2g1215 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 MobiDBLite consensus disorder prediction 228 242 - -
Lcy2g1215 271 MobiDBLite consensus disorder prediction 208 227 - -
Lcy2g1215 271 MobiDBLite consensus disorder prediction 243 271 - -
Lcy2g1215 271 Gene3D - 173 235 - -
Lcy2g1215 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 261 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy2g1215 271 MobiDBLite consensus disorder prediction 39 103 - -
Lcy2g1215 271 MobiDBLite consensus disorder prediction 1 20 - -
Lcy2g1215 271 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 MobiDBLite consensus disorder prediction 1 22 - -
Lcy2g1215 271 MobiDBLite consensus disorder prediction 42 69 - -
Lcy2g1215 271 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g1215 271 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lcy2g1215 271 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1215 Lcy-Chr2:12594737 Lcy4g2252 Lcy-Chr4:49061923 6.67E-30 dispersed
Lcy2g1215 Lcy-Chr2:12594737 Lcy3g1906 Lcy-Chr3:46293655 2.38E-43 wgd
Lcy2g1215 Lcy-Chr2:12594737 Lcy8g2090 Lcy-Chr8:47081214 5.79E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19761 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1215 K08064 - csv:101212860 478.404