Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1246 ATGTTTCAAGAAGAAGGCACATCCTCCATAACTTCCTCCCCTCTCCAGTTGTTCACAATGATGTCTCTTTCTCCTAAATTGGGTTCTCCATATCCATGGCTTAGAGAGCTCAAATCTGAGGAGAGGGGCTTGTATTTAATCCATTTGTTGCTTACCTGTGCAAACCATGTGGCTGTTGGTAGCCTTGACAGTGCTAATCTTGGCCTTGATCAAATATCCCATCTTGCTTCTGCTGATGGTGATACAATGCAGCGGATTGCGGCGTACTTTGCCGAGGCTCTCGCAGATCGAATCCTCAAGACTTGGCCTGGTCTTTACAAGGCCTTCAACTCCACTAAGATACCAATGGTTTCAGAGGAGATTCTTGTTAAGAAGCTGTTTTTTGAAATGTTTCCTTTCCTCAAGGTGGCTATTGTACTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGGGAAAAGATGATTCATATCATTGATCTCAATGCCAATGAAACTGCTCAGTGGCTTGCACTTTTGCAAGTTTTGAGTGTCAGGCCTGAAGGACCTCCTCATTTGAGAATCACTGGGGTTCATCCACAGAAAGAGGTTCTGGATCAAATGGCTCGTAGGCTGACCGAAGAAGCCGAAAAATTGGATATCCCGTTTCAATTCAATTCGGTTATTAGCCGATTAGAGGATCTTGATATGGAAAAGCTTCGTGTAAAAACCGGGGAGGCTCTGGCTATCAACTCAGTTCTTCAGTTGCATACCCTGTTGGCCTCTGATAATGAAGTCATGCAAAAGCCATCTCCATCAGCAGCAAAGTGTGCAAATGGAGTTCAATACTCGAGATACCCGCACTTGAACCAAACCACCTTGAGCGAGTTACTTGACAAGGATCTGGTTAACAGGTGCAGTCCGAGTCCCGACTCAGTTTCCTCGTCAGCATTATCTCAAGCTCATGCTACGAAGATCGACAGCTTTCTGAATGGATTGTGGAGTTTGACGCCAAAGGTGATGGTTGTAACAGAACAAGATTCTAACCATAATGGTTCAACACTCATGGAGAGATTACTAGAGGCTCTCCACACATATGCAGCTATTTTTGATTGCTTAGAATCTAACATGTCAAGAACATCCCTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATTATAGCTTGTGAGGGAGCTGAAAGGAAGGAACGACACGAAAAGCATGAGAAGTGGAGTCAACGGTTCGATCTCGCGGGATTCAGGCATGTGTCTTTGAGTTATTATGGCATGCTGCAGGCACGGAGCCTGCTGCAGAGGTATGGTTGTGATGGTTATAGGATGAAGGAGGAGAATGGTTGTGTGATGCTTTGTTGGCAAGATCGTCCGTTGTACTCGGTTTCGGCTTGGAGGTGTTGTAAGTAG 1416 44.92 MFQEEGTSSITSSPLQLFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDSANLGLDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEEILVKKLFFEMFPFLKVAIVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHPQKEVLDQMARRLTEEAEKLDIPFQFNSVISRLEDLDMEKLRVKTGEALAINSVLQLHTLLASDNEVMQKPSPSAAKCANGVQYSRYPHLNQTTLSELLDKDLVNRCSPSPDSVSSSALSQAHATKIDSFLNGLWSLTPKVMVVTEQDSNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKHEKWSQRFDLAGFRHVSLSYYGMLQARSLLQRYGCDGYRMKEENGCVMLCWQDRPLYSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13179612 13181027 - Maker00021862 Lcy2g1246 626011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1246 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 467 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009739(PANTHER)|GO:0043565(PANTHER)
Lcy2g1246 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
Lcy2g1246 471 Pfam GRAS domain family 46 468 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1246 Lcy-Chr2:13179612 Lcy7g0679 Lcy-Chr7:6284297 5.53E-202 dispersed
Lcy2g1246 Lcy-Chr2:13179612 Lcy6g1910 Lcy-Chr6:40069776 2.36E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19763 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1246 - - - 0.0