Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g1258 | ATGGAAGCTTTCTTGTTGATCACTCAAAACTCTGCAATGCCCATCACCAAAACCTTCATCTTCTTCTTCTTCTTCTTCATGGCCGCTTCCATTTCTGTCATTTTTTCTCAATTATCCCACCGAAAAAGAAAGCAGTCTGTTCGACATGTGTCTCTCCCGCCAGGCCCGACACCGTGGCCGCTCGTCGGCTGCCTCCCAGCAATGTGGAGGAACACGCCGCCGCACCGATGGATTCATGCAATAATGAAGCAATACAACACTGAAATTGCATGCATCCGTCTTGGAAACACCTACGTAATCCCCGTCACTTCTCCAGAACTCGCTCTTGAGTTTTTAAAGACGCACGATTCTGTTTTCGCATCGCGACCTGTCCCTACGACCACCAATATTCTAACCCGTGGATTCCTAACTTCGGCTCTTTCGCCATCGGGACACCAATGGAAGAAAATGCGAAAAATACTTGCTTCGCAAATACTCAATCCATCAACCCTTCTTCGAATGTCTGGACACAGAACAATTGAAGACGATGCTCTTCTACGTCACATTTTCAACGAGTCGAGATCAGGTGGGGCGCTGATCAACTTGAGAAGTGTAACGCTATGTTATTGTGGCAATGTTATCAGGACAATGTTATTCAATAGAAGATACTACAACGATGGAGGGCCAACTTTCAAGGAAGAAGAGGAGCACATTCAAGCATTGCTGACGCTGCTTGAGCATGTTCATGCATTTTCTGTATCTGATTTCGTGCCTTGTTTGAAGTTGTTTGATTTGGATGGACACAAGAAGACTGTAAAACAAGCTTTCGAAGTGATCAAGAAGCATGATGATTCCATTATAGATGAGAGAGTGCAACAATGGAAAGATGGGAAGAGAAAAGAGGTGGATGATATTCTTGACATTCTCATCTCGCTTACAGATGATAATGGAAAATCGCTATTATCAATCCAAGAGATTAAAGCGGAAATCACGGAGTTGCAAATGGCAACGATTGATAATCCTTCAAACGCAGTGGAATGGGCAATGGCGGAGTTACTCAACCGACTAGAAATTCTTAAACAAGCAATTGAGGAATTAGATAGGATAGTTGGAAAAGACAGACTTGTTCAAGAATCCGACATCCCACAACTTAAGTATCTCATGGCTTGTATCAGAGAATCTTTTCGACTTCATCCATTTGCACCTTTCAATGTGCCTCATGTCTCAAACTCTGATGCCATAGTAGCTGGTTACTTCATTCCAAAAGGTAGCCAAGTCTTGCTGAGTCGTTTGGGACTCGGTCGAAATCCGAGGATTTGGGACGATCCATTGAGTTACAATCCACAACGCCATCTCAAGGATGAGATAGTTGAATTAGGATTATCCGAACCGAATCTACGCTTCATTAGCTTCTCCAGAGGGAGAAGAGGTTGCATAGGTATCTCACTAGGCACAACCATTACCATGATGCTCTTTGCTAGGCTGTTACAAGGGTTTTCATGGAGCTTAATGCCTGGAACCACTAAGGTAAACTTCTCTCACTTTGATGAGCTCGCCCTTCCAAACCCACTCCACTTGTATGCAGAGCCACGTCTATCTCATAATATGTATCCTACTTTATAA | 1602 | 43.7 | MEAFLLITQNSAMPITKTFIFFFFFFMAASISVIFSQLSHRKRKQSVRHVSLPPGPTPWPLVGCLPAMWRNTPPHRWIHAIMKQYNTEIACIRLGNTYVIPVTSPELALEFLKTHDSVFASRPVPTTTNILTRGFLTSALSPSGHQWKKMRKILASQILNPSTLLRMSGHRTIEDDALLRHIFNESRSGGALINLRSVTLCYCGNVIRTMLFNRRYYNDGGPTFKEEEEHIQALLTLLEHVHAFSVSDFVPCLKLFDLDGHKKTVKQAFEVIKKHDDSIIDERVQQWKDGKRKEVDDILDILISLTDDNGKSLLSIQEIKAEITELQMATIDNPSNAVEWAMAELLNRLEILKQAIEELDRIVGKDRLVQESDIPQLKYLMACIRESFRLHPFAPFNVPHVSNSDAIVAGYFIPKGSQVLLSRLGLGRNPRIWDDPLSYNPQRHLKDEIVELGLSEPNLRFISFSRGRRGCIGISLGTTITMMLFARLLQGFSWSLMPGTTKVNFSHFDELALPNPLHLYAEPRLSHNMYPTL | 533 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 13391536 | 13393979 | - | Maker00022355 | Lcy2g1258 | 626023 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g1258 | 533 | Coils | Coil | 342 | 362 | - | - | |
| Lcy2g1258 | 533 | SUPERFAMILY | Cytochrome P450 | 46 | 524 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | Gene3D | Cytochrome P450 | 46 | 529 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | PANTHER | CYTOCHROME P450 703A2-RELATED-RELATED | 25 | 530 | IPR051382 | - | |
| Lcy2g1258 | 533 | Pfam | Cytochrome P450 | 53 | 517 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy2g1258 | 533 | PRINTS | E-class P450 group I signature | 107 | 128 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | PRINTS | E-class P450 group I signature | 202 | 220 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | PRINTS | E-class P450 group I signature | 422 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g1258 | 533 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g1258 | Lcy-Chr2:13391536 | Lcy2g1263 | Lcy-Chr2:13487861 | 4.89E-252 | dispersed | |
| Lcy2g1257 | Lcy-Chr2:13375271 | Lcy2g1258 | Lcy-Chr2:13391536 | 1.53E-215 | tandem | |
| Lcy2g1258 | Lcy-Chr2:13391536 | Lcy2g1259 | Lcy-Chr2:13420769 | 0 | tandem |
Pathway information