Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1258 ATGGAAGCTTTCTTGTTGATCACTCAAAACTCTGCAATGCCCATCACCAAAACCTTCATCTTCTTCTTCTTCTTCTTCATGGCCGCTTCCATTTCTGTCATTTTTTCTCAATTATCCCACCGAAAAAGAAAGCAGTCTGTTCGACATGTGTCTCTCCCGCCAGGCCCGACACCGTGGCCGCTCGTCGGCTGCCTCCCAGCAATGTGGAGGAACACGCCGCCGCACCGATGGATTCATGCAATAATGAAGCAATACAACACTGAAATTGCATGCATCCGTCTTGGAAACACCTACGTAATCCCCGTCACTTCTCCAGAACTCGCTCTTGAGTTTTTAAAGACGCACGATTCTGTTTTCGCATCGCGACCTGTCCCTACGACCACCAATATTCTAACCCGTGGATTCCTAACTTCGGCTCTTTCGCCATCGGGACACCAATGGAAGAAAATGCGAAAAATACTTGCTTCGCAAATACTCAATCCATCAACCCTTCTTCGAATGTCTGGACACAGAACAATTGAAGACGATGCTCTTCTACGTCACATTTTCAACGAGTCGAGATCAGGTGGGGCGCTGATCAACTTGAGAAGTGTAACGCTATGTTATTGTGGCAATGTTATCAGGACAATGTTATTCAATAGAAGATACTACAACGATGGAGGGCCAACTTTCAAGGAAGAAGAGGAGCACATTCAAGCATTGCTGACGCTGCTTGAGCATGTTCATGCATTTTCTGTATCTGATTTCGTGCCTTGTTTGAAGTTGTTTGATTTGGATGGACACAAGAAGACTGTAAAACAAGCTTTCGAAGTGATCAAGAAGCATGATGATTCCATTATAGATGAGAGAGTGCAACAATGGAAAGATGGGAAGAGAAAAGAGGTGGATGATATTCTTGACATTCTCATCTCGCTTACAGATGATAATGGAAAATCGCTATTATCAATCCAAGAGATTAAAGCGGAAATCACGGAGTTGCAAATGGCAACGATTGATAATCCTTCAAACGCAGTGGAATGGGCAATGGCGGAGTTACTCAACCGACTAGAAATTCTTAAACAAGCAATTGAGGAATTAGATAGGATAGTTGGAAAAGACAGACTTGTTCAAGAATCCGACATCCCACAACTTAAGTATCTCATGGCTTGTATCAGAGAATCTTTTCGACTTCATCCATTTGCACCTTTCAATGTGCCTCATGTCTCAAACTCTGATGCCATAGTAGCTGGTTACTTCATTCCAAAAGGTAGCCAAGTCTTGCTGAGTCGTTTGGGACTCGGTCGAAATCCGAGGATTTGGGACGATCCATTGAGTTACAATCCACAACGCCATCTCAAGGATGAGATAGTTGAATTAGGATTATCCGAACCGAATCTACGCTTCATTAGCTTCTCCAGAGGGAGAAGAGGTTGCATAGGTATCTCACTAGGCACAACCATTACCATGATGCTCTTTGCTAGGCTGTTACAAGGGTTTTCATGGAGCTTAATGCCTGGAACCACTAAGGTAAACTTCTCTCACTTTGATGAGCTCGCCCTTCCAAACCCACTCCACTTGTATGCAGAGCCACGTCTATCTCATAATATGTATCCTACTTTATAA 1602 43.7 MEAFLLITQNSAMPITKTFIFFFFFFMAASISVIFSQLSHRKRKQSVRHVSLPPGPTPWPLVGCLPAMWRNTPPHRWIHAIMKQYNTEIACIRLGNTYVIPVTSPELALEFLKTHDSVFASRPVPTTTNILTRGFLTSALSPSGHQWKKMRKILASQILNPSTLLRMSGHRTIEDDALLRHIFNESRSGGALINLRSVTLCYCGNVIRTMLFNRRYYNDGGPTFKEEEEHIQALLTLLEHVHAFSVSDFVPCLKLFDLDGHKKTVKQAFEVIKKHDDSIIDERVQQWKDGKRKEVDDILDILISLTDDNGKSLLSIQEIKAEITELQMATIDNPSNAVEWAMAELLNRLEILKQAIEELDRIVGKDRLVQESDIPQLKYLMACIRESFRLHPFAPFNVPHVSNSDAIVAGYFIPKGSQVLLSRLGLGRNPRIWDDPLSYNPQRHLKDEIVELGLSEPNLRFISFSRGRRGCIGISLGTTITMMLFARLLQGFSWSLMPGTTKVNFSHFDELALPNPLHLYAEPRLSHNMYPTL 533
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 13391536 13393979 - Maker00022355 Lcy2g1258 626023
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1258 533 Coils Coil 342 362 - -
Lcy2g1258 533 SUPERFAMILY Cytochrome P450 46 524 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 Gene3D Cytochrome P450 46 529 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 25 530 IPR051382 -
Lcy2g1258 533 Pfam Cytochrome P450 53 517 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy2g1258 533 PRINTS E-class P450 group I signature 107 128 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1258 533 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1258 Lcy-Chr2:13391536 Lcy2g1263 Lcy-Chr2:13487861 4.89E-252 dispersed
Lcy2g1257 Lcy-Chr2:13375271 Lcy2g1258 Lcy-Chr2:13391536 1.53E-215 tandem
Lcy2g1258 Lcy-Chr2:13391536 Lcy2g1259 Lcy-Chr2:13420769 0 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1258 - - - 0.0