Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1323 ATGGCTTGGTTTCTCAGCTTGTTCTTCTTCTTCCTTGTTTCTTCTGCCACTGCATGTGATCGTTGTATTCATCAATCCAAGGCTGCTCATTATTACGATGATAAGCCTACATCATACGGAGGGACATGCGGATATGGAAACTTGGAGTTTGATATCGCCAAAGGATACTTTACAGCTACTGGACCTTCCCTTTATAAACAAGGAGTTGGTTGCGGTGCTTGCTATCAAGTAAGATGTAAGAACAAGAGATTGTGCAACACCATAGGAACTAAAGTAGTTTTGACAGATCAAAGTTATGAAAATCGAGCAGAATTTCTTTTGAGTAGAAAAGCTTTCTCTTCCATGGCTTTAAAGGGAAAAGTCAAAGAACTTTTGAAGAATGATATTGTGGATGTGGAATACAAGAGGATACCTTGTGAATACAAAAATAAAAATTTGTTGGTGCAAGTTGTAGAATGGAGCAACAAACCACACTATTTGGCTATCAAACTCCTATATCAAGGTGGCCAAACTGATATACAGGCAGTTTATATAGCTCAGGTTGGTTCGTCGAAATGGAGTCCCATGAAAAAGCACCAAGGCGCTATTTGGGATACCAATAACGTACCTGGAGGGGCATTACAACTAAAAATGATGGTAACTTCAGGATATAGTAAAAGATGGATTTCTGCAAATTATGTACTTCCTGCTACTTGGAAAAATGGAGAGATCTATGATACTGGAATTCAAATCAAAGACATCGCAGCAGAATATTGTCCAGCTTACCAGTGTGGTGAGAAGCCATGGAAATGA 792 39.02 MAWFLSLFFFFLVSSATACDRCIHQSKAAHYYDDKPTSYGGTCGYGNLEFDIAKGYFTATGPSLYKQGVGCGACYQVRCKNKRLCNTIGTKVVLTDQSYENRAEFLLSRKAFSSMALKGKVKELLKNDIVDVEYKRIPCEYKNKNLLVQVVEWSNKPHYLAIKLLYQGGQTDIQAVYIAQVGSSKWSPMKKHQGAIWDTNNVPGGALQLKMMVTSGYSKRWISANYVLPATWKNGEIYDTGIQIKDIAAEYCPAYQCGEKPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14624867 14626184 + Maker00022507 Lcy2g1323 626088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1323 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lcy2g1323 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy2g1323 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Lcy2g1323 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lcy2g1323 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lcy2g1323 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Lcy2g1323 263 SUPERFAMILY PHL pollen allergen 151 239 IPR036749 -
Lcy2g1323 263 Pfam Lytic transglycolase 61 134 IPR009009 -
Lcy2g1323 263 Gene3D - 141 245 IPR036749 -
Lcy2g1323 263 Pfam Expansin C-terminal domain 154 229 IPR007117 -
Lcy2g1323 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lcy2g1323 263 PANTHER EXPANSIN-B3 7 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy2g1323 263 Gene3D - 12 140 IPR036908 -
Lcy2g1323 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1085 Lcy-Chr11:32691863 Lcy2g1323 Lcy-Chr2:14624867 4.46E-140 dispersed
Lcy2g1317 Lcy-Chr2:14529495 Lcy2g1323 Lcy-Chr2:14624867 5.95E-168 dispersed
Lcy2g1318 Lcy-Chr2:14547589 Lcy2g1323 Lcy-Chr2:14624867 1.82E-177 dispersed
Lcy2g1323 Lcy-Chr2:14624867 Lcy3g0801 Lcy-Chr3:28994657 1.26E-136 dispersed
Lcy2g1323 Lcy-Chr2:14624867 Lcy2g1325 Lcy-Chr2:14666045 5.36E-138 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1323 - - - 0.0