Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1354 ATGAGATCTGGGCGTGTGTGGAGTGGGTGGCGAGATCTTTCTTTCCGGTGTGCGTGGGGAGCTTTCCGGCGAGAGGGACGGTACTTTTGGGTCACTCCGAAGCGTAAGGAATTGGCAAGGACAGCAAGACACGAGCTTGAAAACAGGACCAAAAGATGGACTTTGGAGGAGAAACGGGCCAGAGGGTCGGGCCAAGGCCGGAGGGGTCAGGCCTTGGCCCAACCCCTGCTCGGCCCGTGCTTGCGGGTGATCCGACGTGGTGGTGTTTGTTGGGAGGAAGAAGAACGTATATTGGAGCATTGTGCTGTGTTCTTCAAGTCCATCCTCGGTTCCGCCTGGTTTAGCCCAAATCGTCTTGGAATTCCTAAAAACCCTAGGAGCATGAGCAGGCCACGTCTTCCCCCCTCACAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGCCTCCGCGTGCCGCCGTCCTTCTCCGATTGCAGATCTGCACGTCGCCGTCTTCTGCGCCACCACCGTCGCCGCGAATCACCACCGGTAACGCCCTCTCAGATTTCTCTCTCTCCCTCCCGTTTCTCTCTTGGCTTTATTCTCTCTCTTGTGTATCAGCTCCGCCACCGCCGCCACGTTCAGCCGATCTGATCGTCGTTGCCACCACCTTAAGACAAACAGTCGCGCACCTCTTGAACGTTCGACGATTACAACTAGTGGGTGACAGACAGCGAGAGGTGGTGGTTTCTTTGTTCAGAAGTGTTGAATGTCTGGTAAAGGCAAAGGTTGAAGATGACGGACCTCGTTTTGCTGAAACAGATGATGGGTGGGTATTGTTGGTCTTCCTACTTGCATTGCTCGAGTATTATGAAATTTCAAAAGTTTTAGTGTTCTTAAGTCTTCTGGGAGTTTCTTTATTTGGCATGCTTCCTCGTAAATGTGATGGAGAAACAAGCCAGACCTCTATTTCAGAATTGAAGTTCACCATTGATGCATGTTGCAAGAAATCTAGGAGAAATTTAAGGGCCCGTTTGGTTCTAGCAGTGAGTCTGTCCTTAGTCAACACCGTTGAATGCACCATGGGTGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCCAAGAAATCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGCCAGTAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCGAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACATGTGATGCATTGCATAATCGACAGAATGATGTAGAAGAACAGGCTGCTATATGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTCCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAATTTCAACAACAACTTGAAAATCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGGTCTGTTGAAGAAATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCACCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCCGTTCGTCCGTGGGAAAACCGCTTTCTTGATATTAATCTTAGAGATGGAGTGATGATTCGTGAGAATGGATCAGCTGAGGGCAAAAGTAACTCTAAACCTCATTCAAAAAGTGCTGGCAAGAAAACAAACTTAGTGACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACATTCTGATGGATATGGTTCATCATCACCCACTAAGTCACCTGGCACTGTAGAGGTATCCAGTGCACAGATTCAAAAGCCCAAGTATAAACCTGAGAGGCCATTTGAAGAAGTCAAACCTAAAGTAGATACTGGTTTGAGATCCCATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCATGCCTAATAATGTTGCAGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCAGCAGAACTCCTGGCAAAGCGACTGTGACCAAGTCCATCAACGACAAACCCAAGTCGATTTCAAGAGGTGACTCAAAATCTGCAAAACCCAGATTGCAGAATTGA 2370 46.92 MRSGRVWSGWRDLSFRCAWGAFRREGRYFWVTPKRKELARTARHELENRTKRWTLEEKRARGSGQGRRGQALAQPLLGPCLRVIRRGGVCWEEEERILEHCAVFFKSILGSAWFSPNRLGIPKNPRSMSRPRLPPSQTNLPLVAREGQPPRAAVLLRLQICTSPSSAPPPSPRITTGNALSDFSLSLPFLSWLYSLSCVSAPPPPPRSADLIVVATTLRQTVAHLLNVRRLQLVGDRQREVVVSLFRSVECLVKAKVEDDGPRFAETDDGWVLLVFLLALLEYYEISKVLVFLSLLGVSLFGMLPRKCDGETSQTSISELKFTIDACCKKSRRNLRARLVLAVSLSLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTASNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSDPEAASIPSDSLQTCDALHNRQNDVEEQAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKFQQQLENQARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSAEGKSNSKPHSKSAGKKTNLVTDQSNLSSQKTAASHSDGYGSSSPTKSPGTVEVSSAQIQKPKYKPERPFEEVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNVADPGSQNQTVRNSSRTPGKATVTKSINDKPKSISRGDSKSAKPRLQN 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15361572 15380195 - Maker00022564 Lcy2g1354 626119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1354 789 ProSiteProfiles IQ motif profile. 474 501 - -
Lcy2g1354 789 ProSiteProfiles IQ motif profile. 450 478 - -
Lcy2g1354 789 MobiDBLite consensus disorder prediction 741 771 - -
Lcy2g1354 789 MobiDBLite consensus disorder prediction 634 692 - -
Lcy2g1354 789 Pfam IQ calmodulin-binding motif 452 471 IPR000048 GO:0005515(InterPro)
Lcy2g1354 789 MobiDBLite consensus disorder prediction 633 789 - -
Lcy2g1354 789 PANTHER IQ-DOMAIN 5-RELATED 359 752 - -
Lcy2g1354 789 SMART iq_5 449 471 IPR000048 GO:0005515(InterPro)
Lcy2g1354 789 SMART iq_5 472 493 IPR000048 GO:0005515(InterPro)
Lcy2g1354 789 Gene3D - 450 492 - -
Lcy2g1354 789 MobiDBLite consensus disorder prediction 698 719 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0290 Lcy-Chr1:2611003 Lcy2g1354 Lcy-Chr2:15361572 7.79E-33 dispersed
Lcy2g1354 Lcy-Chr2:15361572 Lcy9g1966 Lcy-Chr9:44620560 2.15E-43 dispersed
Lcy6g0184 Lcy-Chr6:1676458 Lcy2g1354 Lcy-Chr2:15361572 1.92E-06 dispersed
Lcy6g2334 Lcy-Chr6:48126325 Lcy2g1354 Lcy-Chr2:15361572 1.50E-09 transposed
Lcy12g1690 Lcy-Chr12:37375438 Lcy2g1354 Lcy-Chr2:15361572 5.87E-07 wgd
Lcy2g1354 Lcy-Chr2:15361572 Lcy3g1251 Lcy-Chr3:38218158 1.93E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1354 - - - 0.0