Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1354 ATGAGATCTGGGCGTGTGTGGAGTGGGTGGCGAGATCTTTCTTTCCGGTGTGCGTGGGGAGCTTTCCGGCGAGAGGGACGGTACTTTTGGGTCACTCCGAAGCGTAAGGAATTGGCAAGGACAGCAAGACACGAGCTTGAAAACAGGACCAAAAGATGGACTTTGGAGGAGAAACGGGCCAGAGGGTCGGGCCAAGGCCGGAGGGGTCAGGCCTTGGCCCAACCCCTGCTCGGCCCGTGCTTGCGGGTGATCCGACGTGGTGGTGTTTGTTGGGAGGAAGAAGAACGTATATTGGAGCATTGTGCTGTGTTCTTCAAGTCCATCCTCGGTTCCGCCTGGTTTAGCCCAAATCGTCTTGGAATTCCTAAAAACCCTAGGAGCATGAGCAGGCCACGTCTTCCCCCCTCACAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGCCTCCGCGTGCCGCCGTCCTTCTCCGATTGCAGATCTGCACGTCGCCGTCTTCTGCGCCACCACCGTCGCCGCGAATCACCACCGGTAACGCCCTCTCAGATTTCTCTCTCTCCCTCCCGTTTCTCTCTTGGCTTTATTCTCTCTCTTGTGTATCAGCTCCGCCACCGCCGCCACGTTCAGCCGATCTGATCGTCGTTGCCACCACCTTAAGACAAACAGTCGCGCACCTCTTGAACGTTCGACGATTACAACTAGTGGGTGACAGACAGCGAGAGGTGGTGGTTTCTTTGTTCAGAAGTGTTGAATGTCTGGTAAAGGCAAAGGTTGAAGATGACGGACCTCGTTTTGCTGAAACAGATGATGGGTGGGTATTGTTGGTCTTCCTACTTGCATTGCTCGAGTATTATGAAATTTCAAAAGTTTTAGTGTTCTTAAGTCTTCTGGGAGTTTCTTTATTTGGCATGCTTCCTCGTAAATGTGATGGAGAAACAAGCCAGACCTCTATTTCAGAATTGAAGTTCACCATTGATGCATGTTGCAAGAAATCTAGGAGAAATTTAAGGGCCCGTTTGGTTCTAGCAGTGAGTCTGTCCTTAGTCAACACCGTTGAATGCACCATGGGTGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCCAAGAAATCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGCCAGTAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCGAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACATGTGATGCATTGCATAATCGACAGAATGATGTAGAAGAACAGGCTGCTATATGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTCCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAATTTCAACAACAACTTGAAAATCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGGTCTGTTGAAGAAATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCACCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCCGTTCGTCCGTGGGAAAACCGCTTTCTTGATATTAATCTTAGAGATGGAGTGATGATTCGTGAGAATGGATCAGCTGAGGGCAAAAGTAACTCTAAACCTCATTCAAAAAGTGCTGGCAAGAAAACAAACTTAGTGACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACATTCTGATGGATATGGTTCATCATCACCCACTAAGTCACCTGGCACTGTAGAGGTATCCAGTGCACAGATTCAAAAGCCCAAGTATAAACCTGAGAGGCCATTTGAAGAAGTCAAACCTAAAGTAGATACTGGTTTGAGATCCCATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCATGCCTAATAATGTTGCAGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCAGCAGAACTCCTGGCAAAGCGACTGTGACCAAGTCCATCAACGACAAACCCAAGTCGATTTCAAGAGGTGACTCAAAATCTGCAAAACCCAGATTGCAGAATTGA 2370 46.92 MRSGRVWSGWRDLSFRCAWGAFRREGRYFWVTPKRKELARTARHELENRTKRWTLEEKRARGSGQGRRGQALAQPLLGPCLRVIRRGGVCWEEEERILEHCAVFFKSILGSAWFSPNRLGIPKNPRSMSRPRLPPSQTNLPLVAREGQPPRAAVLLRLQICTSPSSAPPPSPRITTGNALSDFSLSLPFLSWLYSLSCVSAPPPPPRSADLIVVATTLRQTVAHLLNVRRLQLVGDRQREVVVSLFRSVECLVKAKVEDDGPRFAETDDGWVLLVFLLALLEYYEISKVLVFLSLLGVSLFGMLPRKCDGETSQTSISELKFTIDACCKKSRRNLRARLVLAVSLSLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTASNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSDPEAASIPSDSLQTCDALHNRQNDVEEQAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKFQQQLENQARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSAEGKSNSKPHSKSAGKKTNLVTDQSNLSSQKTAASHSDGYGSSSPTKSPGTVEVSSAQIQKPKYKPERPFEEVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNVADPGSQNQTVRNSSRTPGKATVTKSINDKPKSISRGDSKSAKPRLQN 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15361572 15380195 - Maker00022564 Lcy2g1354 626119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1354 789 ProSiteProfiles IQ motif profile. 474 501 - -
Lcy2g1354 789 ProSiteProfiles IQ motif profile. 450 478 - -
Lcy2g1354 789 MobiDBLite consensus disorder prediction 741 771 - -
Lcy2g1354 789 MobiDBLite consensus disorder prediction 634 692 - -
Lcy2g1354 789 Pfam IQ calmodulin-binding motif 452 471 IPR000048 GO:0005515(InterPro)
Lcy2g1354 789 MobiDBLite consensus disorder prediction 633 789 - -
Lcy2g1354 789 PANTHER IQ-DOMAIN 5-RELATED 359 752 - -
Lcy2g1354 789 SMART iq_5 449 471 IPR000048 GO:0005515(InterPro)
Lcy2g1354 789 SMART iq_5 472 493 IPR000048 GO:0005515(InterPro)
Lcy2g1354 789 Gene3D - 450 492 - -
Lcy2g1354 789 MobiDBLite consensus disorder prediction 698 719 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1354 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0290 Lcy-Chr1:2611003 Lcy2g1354 Lcy-Chr2:15361572 7.79E-33 dispersed
Lcy2g1354 Lcy-Chr2:15361572 Lcy9g1966 Lcy-Chr9:44620560 2.15E-43 dispersed
Lcy6g0184 Lcy-Chr6:1676458 Lcy2g1354 Lcy-Chr2:15361572 1.92E-06 dispersed
Lcy6g2334 Lcy-Chr6:48126325 Lcy2g1354 Lcy-Chr2:15361572 1.50E-09 transposed
Lcy12g1690 Lcy-Chr12:37375438 Lcy2g1354 Lcy-Chr2:15361572 5.87E-07 wgd
Lcy2g1354 Lcy-Chr2:15361572 Lcy3g1251 Lcy-Chr3:38218158 1.93E-10 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42