Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1368 ATGGAGCATTTCTTCATCTCTCTCTTAATCCTCTTCTTCTCCTTCATCTCTCTCACTCTCTTCGTCCTCTTCTACAAGCACAGATCCTCTTTCTCCTATCCAAACACTCCTCCGGGCTCCATCGGTATTCCCATCCTCGGCGAGACTCTCGAGTTCTTCTCCACCGGCTGGAAAGGCGAGCCCGAGAAGTTCATCTTCGACCGTCTCACTAAGTACAAGTCCGATATCTTCAAGACCTCCATCGTCGGCGTTCCGGCCGCCATCTTCTGCGGCCCTGTCTGCAACAAGTTCCTCTTCTCCAATGAGAACAAACTCGTCACCGCTTGGTGGCCCGACTCCGTCAACAAAATCTTCCCCTCTTCCACGCAGACTAGCTCCATGGAGGAAGCTAAGAAGCTCAAGAAGCTCCTCCCGCAGTTCCTTAAGCCCGAGGCGCTACAGAGATACATCGGAATCATGGACGAACTCGCTCACCGCCACTTCGCTTCCTCCTGGGAGAACAAAGAACAAGTCCTCGTGTTTCCCCTCGCCAAAAGCTTCACGTTCTCTCTGGCGTGCCGATTGTTCGTGAGCGTGGACGATCCAATCCACGTGGAGAGATTATCGGGGCCGTTTCAGCACATCGCGGCAGGGATCATATCGATGCCGATCGATTTACCAGGAACGCCGTTCCATCGAGGGATTAAGGCGTCGAACTACATTAGAAAGGAACTTCTGTCGATCGTGAAGCAGAGGAAATCGGATCTGGCGGAAGGAAAGGCGTCGCCGACGCAGGACATTCTGTCTCACATGCTTCTCACCTGCGATGAGAGCGGACAGTACATGAACGAAGCGGATATTGCCGATAAGATTCTCGGATTGTTGATCGGCGGCCATGATACTGCCAGCGCCGCCTGTACTTTCATCGTCAAGTTTCTTGCTGAGCTTCCTCATATCTACGACGGCGTCTACAGAGGTCTTGACCTTATGGTCAAAGGGGTTAAAGAGCAAATGGAAATAGCAAAAGCAAAAGCCCCAGGGGAGCTGTTGAACTGGGAAGACATTAAGAAGATGAAATATTCATGGAATGTGGCATGTGAGGTTCTGAGACTTGCTTCCCCACTCCAAGGTGCCTTTAGGGAAGCTATGAACGACTTCGTTTTCAATGGCTTCTACATTCCCAAGGGCTGGAAGCTATATTGGAGTTCAAACTCAACACACAAAAACGCAGACTACTTCCCAGAGCCCTACAAATTCGACCCATCAAGATTCGAAGGCGACGGCCCTGCGCCCTACACCTTTGTGCCCTTCGGCGGAGGGCCAAGAATGTGCCCTGGAAAGGAGTACGCCAGGCTCGAGATTCTGGTGTTCATGCACAATCTGGTCAAGAGATTCAAATGGGCAAAGATTCTTGAGAAAGAGAAGATCGTCGTTGACCCAATGCCAATCCCTCAAAAAGGTCTACCCGTTCGCCTCTTTCCTCATAAATCTGTCTCTGTTTAA 1482 51.01 MEHFFISLLILFFSFISLTLFVLFYKHRSSFSYPNTPPGSIGIPILGETLEFFSTGWKGEPEKFIFDRLTKYKSDIFKTSIVGVPAAIFCGPVCNKFLFSNENKLVTAWWPDSVNKIFPSSTQTSSMEEAKKLKKLLPQFLKPEALQRYIGIMDELAHRHFASSWENKEQVLVFPLAKSFTFSLACRLFVSVDDPIHVERLSGPFQHIAAGIISMPIDLPGTPFHRGIKASNYIRKELLSIVKQRKSDLAEGKASPTQDILSHMLLTCDESGQYMNEADIADKILGLLIGGHDTASAACTFIVKFLAELPHIYDGVYRGLDLMVKGVKEQMEIAKAKAPGELLNWEDIKKMKYSWNVACEVLRLASPLQGAFREAMNDFVFNGFYIPKGWKLYWSSNSTHKNADYFPEPYKFDPSRFEGDGPAPYTFVPFGGGPRMCPGKEYARLEILVFMHNLVKRFKWAKILEKEKIVVDPMPIPQKGLPVRLFPHKSVSV 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15669979 15675630 + Maker00022695 Lcy2g1368 626133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1368 493 Gene3D Cytochrome P450 26 487 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 PANTHER CYTOCHROME P450 26 36 466 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Lcy2g1368 493 Pfam Cytochrome P450 37 465 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 SUPERFAMILY Cytochrome P450 28 487 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 CDD CYP90-like 68 487 - -
Lcy2g1368 493 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 FunFam Taxadiene 5-alpha hydroxylase 27 488 - -
Lcy2g1368 493 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy2g1368 493 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1368 493 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0957 Lcy-Chr1:8398741 Lcy2g1368 Lcy-Chr2:15669979 3.01E-44 dispersed
Lcy2g1368 Lcy-Chr2:15669979 Lcy9g1199 Lcy-Chr9:36382889 5.39E-109 dispersed
Lcy2g0361 Lcy-Chr2:2974152 Lcy2g1368 Lcy-Chr2:15669979 1.44E-67 transposed
Lcy2g0362 Lcy-Chr2:2981515 Lcy2g1368 Lcy-Chr2:15669979 1.44E-154 transposed
Lcy12g0941 Lcy-Chr12:14415155 Lcy2g1368 Lcy-Chr2:15669979 1.32E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1368 K20667 - csv:101206033 833.172