Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1443 ATGGCGCTTGGAACGGCGGACGGCGGCGGAAGACTTTTTACACAGCAGAGAAGGAGAGAAAAGCTCGAGGGCTGGCGCAACGTCAGCGACAGATCAGCGCCAAATCATCGCCAACCTGGTGATGTGTGCCTCGTCAGCGTGCTAACAAGGAAGTCGCGTACCAGGCTACACGAGGCCTATAAATACACTGAACCCGAGCCGCCCTTCGATTCTTCTTCTTCTTCTTCTCGATTAGCGTCGCCATTAATGCGCTTTCGTGTCTTTGTCATCTTCCCAAGTCAAAACTTTGGGTTGATTGTTTTTGCGATCGGGGGAATCGTTGTTTGTTGGTCTTGTCGCGATGTTGAATTTGAATCAGAGTTTGTGGGAGGAAGTAAGAGGGCCATTCCTGGTTCCCCTGTATCTCCTGTGCTGGGAGCAAGGAAACAGAAAGACTCAGACAATGGGCTGAAGTCTAAGAATTCTGTGTTTGAGCAGCAGAGAGAAGCAACAGTGCACAGAATTCCTGGTAGGATGTTCTTGAATGGATCCAGTGAAGTTGCCTCACTTCATACTCAACAGGGCAAGAAAGGGATGAACCAAGATGCCATGGTTGTGTGGGAGAATTTTGGCTCCAGAACAGATTCATTCTTCTGTGGAGTTTTTGATGGCCATGGTCCATATGGTCATCTGGTCGCAAAAAGAGTGAGGGATTCTCTTCCTCTGAAACTGACTGCACATTGGGAGGCTAATGCAAGCAGTGATGACATTTCAAACGAGTTCGGTAGTAAAACAGAAGGTGTGAACAATGAAGATTCCGCATTAGCAGCTGGTTGGGAGGAAGCAAGTTCTCCTCTTAAGCACCATGAAATTTCTGAAAAACTGAAGGAATCATTTCTGAAGGCTTTTAAGATTATGGATGGGGAACTCAAAATGCAACCAAGTATTGATTGTTTCTGTAGTGGGACAACAGCAGTAGCTCTTGTTAAGCAGGGTCGAGATCTTGTTATTGGAAACGTTGGGGACTCGCGAGCTGTGCTGGGTACTAGAGATAAGGATAATTCTCTTCAAGCAGTTCAGTTGACCATAGATCTCAAGCCTGATATTCCAGCGGAAGCGGAGAGAATTCTCAAATGCAATGGTCGGGTATTTGCTCATCAGGATGAACCAGAAGTTGCTAGGGTATGGCTTCCAAACAATGATTCCCCTGGGCTGGCGATGGCTCGATCTTTCGGAGACTTTTGCCTCAAGGATTTTGGTCTAATTTCTGTTCCTGAAATATCATATCGGTATCTGACAGACGAGGATGAGTTCATAGTTTTAGCTACAGACGGAATTTGGGATGTTCTCTCAAACAAAGAGGTAGTTGACATTGTAGCATCAGCCCCAGCTCGTTCCGCAGCCCGATCGTTGGTTGAGGCTGCAACTAAAGCATGGAGAAGCAAGTTTCCTTCTTCCAACGTTGACGACTGTGCTGTTGTGTGCCTCTTCCTCGACTCGAACTTGAACGTTATGGTGTCGGAGACAAATATTAAATCCAAGGAAGAGGTTAATTCAGCAATCCAAGCTGAGACAGCCATGGTGGATGATGATGATGATGTCTCAGGAGCAGCTGGTTTACGGAATTCGGAAATCGTGCAAACATTCGGAGTTCCTCCGAGAATTGGACGATAG 1653 46.7 MALGTADGGGRLFTQQRRREKLEGWRNVSDRSAPNHRQPGDVCLVSVLTRKSRTRLHEAYKYTEPEPPFDSSSSSSRLASPLMRFRVFVIFPSQNFGLIVFAIGGIVVCWSCRDVEFESEFVGGSKRAIPGSPVSPVLGARKQKDSDNGLKSKNSVFEQQREATVHRIPGRMFLNGSSEVASLHTQQGKKGMNQDAMVVWENFGSRTDSFFCGVFDGHGPYGHLVAKRVRDSLPLKLTAHWEANASSDDISNEFGSKTEGVNNEDSALAAGWEEASSPLKHHEISEKLKESFLKAFKIMDGELKMQPSIDCFCSGTTAVALVKQGRDLVIGNVGDSRAVLGTRDKDNSLQAVQLTIDLKPDIPAEAERILKCNGRVFAHQDEPEVARVWLPNNDSPGLAMARSFGDFCLKDFGLISVPEISYRYLTDEDEFIVLATDGIWDVLSNKEVVDIVASAPARSAARSLVEAATKAWRSKFPSSNVDDCAVVCLFLDSNLNVMVSETNIKSKEEVNSAIQAETAMVDDDDDVSGAAGLRNSEIVQTFGVPPRIGR 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17734902 17739325 + Maker00021639 Lcy2g1443 626208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1443 550 PANTHER PROTEIN PHOSPHATASE 158 490 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy2g1443 550 Gene3D - 175 493 IPR036457 -
Lcy2g1443 550 CDD PP2Cc 180 491 IPR001932 -
Lcy2g1443 550 Pfam Protein phosphatase 2C 283 466 IPR001932 -
Lcy2g1443 550 MobiDBLite consensus disorder prediction 133 152 - -
Lcy2g1443 550 SMART PP2C_4 169 489 IPR001932 -
Lcy2g1443 550 ProSiteProfiles PPM-type phosphatase domain profile. 180 491 IPR001932 -
Lcy2g1443 550 SUPERFAMILY PP2C-like 178 492 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1443 Lcy-Chr2:17734902 Lcy3g1190 Lcy-Chr3:37222537 1.05E-155 dispersed
Lcy12g0857 Lcy-Chr12:11843620 Lcy2g1443 Lcy-Chr2:17734902 2.20E-08 wgd
Lcy2g1443 Lcy-Chr2:17734902 Lcy4g1251 Lcy-Chr4:28606587 7.59E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1443 - - - 0.0