Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1461 ATGAGGCTCCAAGTGAATCAAGACGATGTCGACGATGTTCTTGTTCCTCCTCCTAACTTCTCCATGGTCGAGGATGGTATTTTCCGTTCCGGATTCCCTCAGCCCCCCAATTTCCCCTTCCTCAAGAACCTCAATCTCCGCTCCGTCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAGAGCCAATAGCATCAGGCTTTTTCAGTTCAAAATTGAAGGGAAGAAGGAGCCTTTCGATTCGATTCCGAAGGATGCTATCCTTGAGGCCCTAAAAATCCTAATTGATGTTAGAAATCACCCCATTTTGATCCACTGCAAGCGTGGGAAGAGAATTAGAAGAGTACCATTAGGAATGGAATCCATTGTTCTAAGAAAGCAGAAGAACAAAGTAGCATTGAGATTCCTTCTCTTATCCCCATCGCAGCATCGAACAGGCTCACTCGTCGGTTGCCTGAGGAAATTTCAGAACTGGTGCTTGACTTCCGTGTTCGAGGAGTACCAGCGATTCGCAGGCTTGAAGTCTAGGACGACAGATCTACAATTCATCGAGACGTTCGACGTTATGTCTCTGAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGTTACAGCTCAAGCAAGAGGAGGCTGGTGTATGGAGAAGAAAACTTGCAGAAGCCCCAAACAACATCAGTTTAG 699 45.78 MRLQVNQDDVDDVLVPPPNFSMVEDGIFRSGFPQPPNFPFLKNLNLRSVIYLCPEPYPEENLEFLRANSIRLFQFKIEGKKEPFDSIPKDAILEALKILIDVRNHPILIHCKRGKRIRRVPLGMESIVLRKQKNKVALRFLLLSPSQHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGLKSRTTDLQFIETFDVMSLRQCVYSIIYQYQGYSSSKRRLVYGEENLQKPQTTSV 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18223133 18225400 - Maker00008165 Lcy2g1461 626226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1461 232 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 217 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Lcy2g1461 232 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 115 IPR029021 -
Lcy2g1461 232 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 192 IPR029021 -
Lcy2g1461 232 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Lcy2g1461 232 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Lcy2g1461 232 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
Lcy2g1461 232 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Lcy2g1461 232 Gene3D Protein tyrosine phosphatase superfamily 13 118 IPR029021 -
Lcy2g1461 232 Gene3D Protein tyrosine phosphatase superfamily 145 195 IPR029021 -
Lcy2g1461 232 CDD PFA-DSP_Siw14 14 192 - -
Lcy2g1461 232 Pfam Tyrosine phosphatase family 146 194 IPR004861 -
Lcy2g1461 232 Pfam Tyrosine phosphatase family 14 117 IPR004861 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1461 Lcy-Chr2:18223133 Lcy8g1593 Lcy-Chr8:42521546 1.04E-48 dispersed
Lcy2g1461 Lcy-Chr2:18223133 Lcy4g0731 Lcy-Chr4:8831749 1.62E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1461 K18045 - csv:101211082 330.102