Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g1465 | ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGGCACTCCTCTGCCCTTACGCCATCTTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCAACATGTAGATTTAATCATCCGCCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAGCCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCTACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTGCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTATCCAACCGTACAATCACCAACTCCTGGTCAGCAGTCATATCCAGGAGGAAGCACAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCTCAGGGAGTTCTCTCTGTTCCAGGCTGGAATGCATTCAACGTCGTGTCCGTGTCTCGTGTCCGATCAGCTAGGATCAGTTTCATCCTCAGAAAGTCCACAACAAACGGTGGGGACATAGTCAGATTTATGAAGCTTAACCCCAGAGTGAATGAGTTGTTGCAGGGATCTAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCGTTTGTCGGTTTCATCATCCCAGAGAAAGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTCCCATTACGCCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTCGGCCCGAGCTGCAAGTTTGATCATCCTATGGGAATCTTCACATACAATCTCTCTGCAGCGTCATCGGCCAATGCCCCAGTTCAGCATTTGTTCGGGACATCTTCAGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGCAGGATCTACAAAGCCGAGGCGACTATCACTCTCGGAGAGTCGAGAGATGCCATCTGACGATGAAAATATCGACGCCGAGGGCTGA | 1299 | 47.04 | MEYDSGIPMSVTEGHSSALTPSLREGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNVVSVSRVRSARISFILRKSTTNGGDIVRFMKLNPRVNELLQGSRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLVEAGSTKPRRLSLSESREMPSDDENIDAEG | 432 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 18399312 | 18412422 | + | Maker00008230 | Lcy2g1465 | 626230 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g1465 | 432 | Gene3D | - | 51 | 128 | - | - | |
| Lcy2g1465 | 432 | Gene3D | - | 284 | 367 | - | - | |
| Lcy2g1465 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 338 | 366 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SUPERFAMILY | CCCH zinc finger | 341 | 365 | IPR036855 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 53 | 81 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SUPERFAMILY | CCCH zinc finger | 58 | 81 | IPR036855 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SUPERFAMILY | CCCH zinc finger | 296 | 321 | IPR036855 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SUPERFAMILY | CCCH zinc finger | 102 | 127 | IPR036855 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | Gene3D | - | 129 | 180 | - | - | |
| Lcy2g1465 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 292 | 320 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | MobiDBLite | consensus disorder prediction | 399 | 432 | - | - | |
| Lcy2g1465 | 432 | FunFam | Zinc finger nuclease 2 | 52 | 129 | - | - | |
| Lcy2g1465 | 432 | SUPERFAMILY | CCCH zinc finger | 146 | 172 | IPR036855 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | PANTHER | PROTEIN PHOSPHATASE RELATED | 25 | 366 | IPR050974 | GO:0003729(PANTHER) | |
| Lcy2g1465 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 144 | 172 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | ProSiteProfiles | Zinc finger C3H1-type profile. | 98 | 126 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SMART | c3hfinal6 | 53 | 80 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SMART | c3hfinal6 | 144 | 171 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SMART | c3hfinal6 | 338 | 365 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SMART | c3hfinal6 | 292 | 319 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | SMART | c3hfinal6 | 98 | 125 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | FunFam | CCCH type zinc finger protein | 290 | 375 | - | - | |
| Lcy2g1465 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 101 | 125 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 293 | 319 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 147 | 171 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 339 | 365 | IPR000571 | GO:0046872(InterPro) | |
| Lcy2g1465 | 432 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 54 | 80 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1433 | Lcy-Chr11:38234292 | Lcy2g1465 | Lcy-Chr2:18399312 | 3.46E-23 | dispersed | |
| Lcy2g1465 | Lcy-Chr2:18399312 | Lcy5g2161 | Lcy-Chr5:44575018 | 6.50E-15 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19768 | None | None | None | None | Lcy | TF |
Pathway information