Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1534 ATGGCCTTCAATTATAATATAAAGAAGGCTTTAGGAGGCGATGAGAAGCAAAACAAATTAAGTAGACGAATAATGGAAGCCTCCTTTGCATCATATTATTCTGTTTGTTTCATCTTCTTCCTTTCCCTCATATTTCCCCACCAATCTCTCTGCCAACAGCCATATGTTGTTGGAAATGAGACAAGCTGCTCTATCAATGATGCTTCCACTCCCCAAAGATATTCTTGCACTGATTCTCCTCACTCATGCAATTCCTTTTTGCTTGTAAGATCCCAGTCTCACAATGCTGGCTTGTACTTCTTCAATACACCATTAGGAAACAGAACTTTGTTGAAGAAGGAAGTTTATTGTACGTGTGAGGAGGCTTCTTTGTATCAGAGTATCACGGAATACAATATTAGGAGTGGTGATAGTTATAAAAAAATCGCAAATGATGTTTTTCATGGCTTCACCAGCTGTTGGATGTTGAGAACTGTGAACTCTAACCGTTCTATTGATGATACTTCTTCGGTAGGCACAAGTCTTAAAGTTCCGTTGCGATGCGCTTGTCCTACCTATGCTCAGCAAGCTCATGGGGTTGGGGCTTTGGTTGTGTACATGCTCCAACCAAATGAGACCATTGGATCAATTGCGAGGGATTTTGGGGTTGAGGAAAAAAGCATTTTGGAAGCAAACATGCTTGAGAATTCAAGCCACATCTTCCCATTTACGCTTCTTTTGGTTCCGTTGGGTGAAAATGAGATCTGCAACATAGACACATCCTCTTACAGTTGTAGCATCCCGCTTCTTTCTGATATGCTGAGACCAGTTCTACTCATTGGCATAGCCACCCTAATTGCAATAGGTCTATCTCTTGCTCTTGTCTTGAGCAGTATACTTGGACTATTTTGTTGTTGTTGCGGATGCAAAGGACATCAACTACTCAACAAGAGAAGAAGACACAAACTTACTAAGAAAAAGTATTTCAAGCAAAATGGTGGTATCTTATTGCAGAAAAAACTTCTTGAAGATAATGAGAGAGTAAAAATATTTACTCAAGAAGAGCTTGAACAAGCAACGGATAACTACAGTCAAAGTAGGTTTCTCGGTCAAGGAGGGTATGGCACAGTTTATAAAGGGATACTCCATGACAACACTATAGTTGCAGTCAAAAAGTCAAAGCAAATTGAAGAAACTTGGATTGAACAATTCATCAATGAAGTTATTATTCTCTCTCGAATTAACCACAAAAATATTGTCAGGCTTCTGGGTTGTTGTTTAGAAACTGAGTTTCCTTTGCTAGTCTATGAATTTGTTTCGAATGGGACACTTTCACACCATGTTCACAATAAAGATATGGGAGAATCACTTCCTCTTTCGTGGGAAACTCGTCTCAGAATTGCTTCTGAAGTTGCTGGAGCTATTTCTTACATGCACTCAACAGCTTCAACCCCCATTTTTCATAGAGATATCAAGTCTCTAAACATTCTGTTGGATGATAACTATAGTGCAAAAGTTTCTGATTTTGGAACATCAAGATTTGTCTCATGCGATCAATCTCATTTGACCACGAGAGTGCAAGGAACTTTTGGATACATTGATCCTGAGTACTTTAGATCAAGTCAATACACTGAAAAGAGTGACGTTTATAGCTTTGGAGTCTTAATGGTAGAGCTATTAACTGGGAAGCTACCTTTCACATTTGCAAGAAATGAGGGTAAAAATCTATTAGACTACTTCATTTCATTGGAAAGGGCTAACGAGCTTGCTGGAATTTTGGATATTGCGCTGGCTGAAGAAGAAAAGATGGAGGCTATTAACTTTGTCGCAAAACTCACCAGCAAATGTTTGAGACCAATTGGGAAAGAGAGGCCTACAATGAAACAAGTATATTTGGAACTAGAAGGATTGAAGAAAACTCAAGATTGTTGGACAATTACCGAAGAAAGCCAATCAATCAGAACTTATTCATTAAACTCTTTAGGGACTACTGATGATGATCTTCCAAGATGA 1992 38.76 MAFNYNIKKALGGDEKQNKLSRRIMEASFASYYSVCFIFFLSLIFPHQSLCQQPYVVGNETSCSINDASTPQRYSCTDSPHSCNSFLLVRSQSHNAGLYFFNTPLGNRTLLKKEVYCTCEEASLYQSITEYNIRSGDSYKKIANDVFHGFTSCWMLRTVNSNRSIDDTSSVGTSLKVPLRCACPTYAQQAHGVGALVVYMLQPNETIGSIARDFGVEEKSILEANMLENSSHIFPFTLLLVPLGENEICNIDTSSYSCSIPLLSDMLRPVLLIGIATLIAIGLSLALVLSSILGLFCCCCGCKGHQLLNKRRRHKLTKKKYFKQNGGILLQKKLLEDNERVKIFTQEELEQATDNYSQSRFLGQGGYGTVYKGILHDNTIVAVKKSKQIEETWIEQFINEVIILSRINHKNIVRLLGCCLETEFPLLVYEFVSNGTLSHHVHNKDMGESLPLSWETRLRIASEVAGAISYMHSTASTPIFHRDIKSLNILLDDNYSAKVSDFGTSRFVSCDQSHLTTRVQGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPFTFARNEGKNLLDYFISLERANELAGILDIALAEEEKMEAINFVAKLTSKCLRPIGKERPTMKQVYLELEGLKKTQDCWTITEESQSIRTYSLNSLGTTDDDLPR 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20265714 20268767 - Maker00029627 Lcy2g1534 626299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1534 663 FunFam Wall-associated receptor kinase 2 329 431 - -
Lcy2g1534 663 FunFam Wall-associated receptor kinase 2 432 649 - -
Lcy2g1534 663 Gene3D Phosphorylase Kinase; domain 1 330 431 - -
Lcy2g1534 663 CDD STKc_IRAK 362 630 - -
Lcy2g1534 663 Coils Coil 335 355 - -
Lcy2g1534 663 SUPERFAMILY Protein kinase-like (PK-like) 342 650 IPR011009 -
Lcy2g1534 663 CDD LysM 197 241 IPR018392 -
Lcy2g1534 663 SMART LysM_2 198 242 IPR018392 -
Lcy2g1534 663 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524(InterPro)
Lcy2g1534 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g1534 663 SMART serkin_6 356 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1534 663 Gene3D LysM domain 188 250 IPR036779 -
Lcy2g1534 663 SUPERFAMILY LysM domain 197 242 IPR036779 -
Lcy2g1534 663 Pfam LysM domain 199 242 IPR018392 -
Lcy2g1534 663 Gene3D Transferase(Phosphotransferase) domain 1 432 652 - -
Lcy2g1534 663 Pfam Protein kinase domain 356 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1534 663 ProSiteProfiles LysM domain profile. 129 177 IPR018392 -
Lcy2g1534 663 ProSiteProfiles LysM domain profile. 197 241 IPR018392 -
Lcy2g1534 663 ProSiteProfiles Protein kinase domain profile. 356 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1534 663 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 83 632 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1205 Lcy-Chr11:34512863 Lcy2g1534 Lcy-Chr2:20265714 9.07E-153 dispersed
Lcy2g1534 Lcy-Chr2:20265714 Lcy2g1540 Lcy-Chr2:20502747 1.29E-263 dispersed
Lcy2g1534 Lcy-Chr2:20265714 Lcy2g1538 Lcy-Chr2:20416519 5.59E-235 proximal
Lcy1g2551 Lcy-Chr1:46483928 Lcy2g1534 Lcy-Chr2:20265714 2.78E-59 wgd
Lcy2g1534 Lcy-Chr2:20265714 Lcy2g2014 Lcy-Chr2:38132784 2.37E-61 wgd
Lcy2g1534 Lcy-Chr2:20265714 Lcy3g0282 Lcy-Chr3:9205143 1.24E-20 wgd
Lcy2g1534 Lcy-Chr2:20265714 Lcy3g0133 Lcy-Chr3:3385088 5.39E-65 wgd
Lcy2g1534 Lcy-Chr2:20265714 Lcy4g1566 Lcy-Chr4:39577499 9.51E-49 wgd
Lcy2g1534 Lcy-Chr2:20265714 Lcy9g0533 Lcy-Chr9:16624107 4.38E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65745 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1534 - - - 0.0