Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1538 ATGACCTATTACACTATCAAAAGTGGCGATAGTTATGAAAAGATAGCAAATGATATTTTTCAAGGCCTAACGACCTGTTCAGTGTTGAGAAGTCAGAATCATGAGTATGCTATCAATAATAATACTTCTTCGATCGGCCGAAGCGTCGACGTTCCGTTGCGATGTGCTTGCCCATCCAAACCTCAAGAAGCCAACGGAGTTGTGTCCTTGCTTGTTTATATTGTACAAGAAAATCACGAGACTATTGGATCCGTTGCGAGAGATTTTGGGGTTGAGAAAGAAAGCATCTTGGAAGCCAACATGCTTTCGAATTCGAGTCAGATTTATCCCTTCACGCCTATTTTGGTTCCATTGGGAAAAAATGAGACTTGCAGAATCAACAATAATTGCTCTTCTTCTCTAAGTGAGGATCGCGAATCAATTTATCCATACATCTTACTTGCAATAGGTGCTGTAGTAATACTATGCCGAGGACGTCAACTACTGATGAACAAAATAAAACTCAGGCTTTGCAAGAGAAAGTTTTTCAAGCAAAATGGTGGTCTCTTGCTGAGGCAAAAACTACTTGAAGATAGTGAGAGAGTAAAAGTGTTTACACAGGAAGAACTCGAACGGGCAACAGATAACTTCAATCAAAGTAGATTTCTGGGTCAAGGAGCATATGGCACAGTTTACAAAGGGATGCTCCACGACAGCACCATTGTTGCAATCAAAAGGTCGAAGCAAATCGAGGCAAACTGGATCGAACAATTCATTAACGAAGTTATTATCCTCTCTCAGATCAACCATAGAAATATTGTCAAGCTTCTGGGATGTTGTTTAGAAACCGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCTAACGGAACACTTTCGCACCATATTCACAAGGAAGCTACAAGAGAATCACCTCCTCTTCCATGGGAAACTCGTCTCAAAATCGCTTCTGAAGTTGCAGGAGCTATATCTTACATGCATTCTGCAGCTTCAATTCCTATTTATCATAGAGATATCAAGTCTCTCAACATACTTTTGGATGAGAACTATAGTGCAAAAGTTTCTGATTTTGGAACGTCCAGATTTGTATCATGTGATCAATCTCATTTGACGACTAAAGTTTTGGGAACTTTTGGATACATAGATCCTCAGTACTTCAGATCAAGTCAATACACAGAAAAGAGCGACGTCTATAGTTTTGGAGTTTTAATGGTAGAGCTTTTAACTGGGAAACAACCCGTCACTTTTGCAAAAACTGATGATAGGAGCCTTTTAGACTATTTCATTTCATTGGAAAAGGCTAATGAGCTTGTTGAAATTCTAGATATTACAGTAGCCAAAGAAGAAAGGATGGACGTTGTTAACAACGTTGCAACGCTTGCCACGAAATGCTTGAGACCAATTGGAAAAGACAGACCGACAATGAAACATGTATATCTGGAACTAGAAGGATTGAGACAACCTGAAGATCATTCAAATGTTAGTGAAGAAATTGAATCAAATGAAACTTCTTCATCATTCTCTCTAGAGGCTGACGACGACGAGATTACAGAAGATAGCACCATCATATCCATTGAAACTATATAG 1584 38.89 MTYYTIKSGDSYEKIANDIFQGLTTCSVLRSQNHEYAINNNTSSIGRSVDVPLRCACPSKPQEANGVVSLLVYIVQENHETIGSVARDFGVEKESILEANMLSNSSQIYPFTPILVPLGKNETCRINNNCSSSLSEDRESIYPYILLAIGAVVILCRGRQLLMNKIKLRLCKRKFFKQNGGLLLRQKLLEDSERVKVFTQEELERATDNFNQSRFLGQGAYGTVYKGMLHDSTIVAIKRSKQIEANWIEQFINEVIILSQINHRNIVKLLGCCLETEFPLLVYEFVSNGTLSHHIHKEATRESPPLPWETRLKIASEVAGAISYMHSAASIPIYHRDIKSLNILLDENYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPQYFRSSQYTEKSDVYSFGVLMVELLTGKQPVTFAKTDDRSLLDYFISLEKANELVEILDITVAKEERMDVVNNVATLATKCLRPIGKDRPTMKHVYLELEGLRQPEDHSNVSEEIESNETSSSFSLEADDDEITEDSTIISIETI 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20416519 20418187 + Maker00029568 Lcy2g1538 626303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1538 527 SUPERFAMILY Protein kinase-like (PK-like) 194 481 IPR011009 -
Lcy2g1538 527 Coils Coil 189 209 - -
Lcy2g1538 527 CDD STKc_IRAK 216 484 - -
Lcy2g1538 527 Gene3D LysM domain 58 132 IPR036779 -
Lcy2g1538 527 ProSiteProfiles Protein kinase domain profile. 210 493 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1538 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g1538 527 Pfam LysM domain 4 34 IPR018392 -
Lcy2g1538 527 Pfam LysM domain 80 117 IPR018392 -
Lcy2g1538 527 FunFam Wall-associated receptor kinase 2 286 504 - -
Lcy2g1538 527 Pfam Protein kinase domain 211 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1538 527 Gene3D Transferase(Phosphotransferase) domain 1 286 509 - -
Lcy2g1538 527 ProSitePatterns Protein kinases ATP-binding region signature. 216 238 IPR017441 GO:0005524(InterPro)
Lcy2g1538 527 ProSiteProfiles LysM domain profile. 2 51 IPR018392 -
Lcy2g1538 527 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 89 492 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy2g1538 527 SMART LysM_2 72 117 IPR018392 -
Lcy2g1538 527 SMART LysM_2 3 52 IPR018392 -
Lcy2g1538 527 Gene3D Phosphorylase Kinase; domain 1 185 285 - -
Lcy2g1538 527 ProSiteProfiles LysM domain profile. 71 116 IPR018392 -
Lcy2g1538 527 MobiDBLite consensus disorder prediction 488 507 - -
Lcy2g1538 527 SMART serkin_6 210 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1538 527 CDD LysM 72 110 IPR018392 -
Lcy2g1538 527 FunFam Wall-associated receptor kinase 2 183 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1538 Lcy-Chr2:20416519 Lcy2g1541 Lcy-Chr2:20557177 1.02E-247 dispersed
Lcy2g1534 Lcy-Chr2:20265714 Lcy2g1538 Lcy-Chr2:20416519 5.59E-235 proximal
Lcy2g1538 Lcy-Chr2:20416519 Lcy2g1540 Lcy-Chr2:20502747 2.23E-236 proximal
Lcy11g1205 Lcy-Chr11:34512863 Lcy2g1538 Lcy-Chr2:20416519 6.38E-160 transposed
Lcy1g2133 Lcy-Chr1:29590317 Lcy2g1538 Lcy-Chr2:20416519 1.75E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65746 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1538 - - - 0.0