Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1540 ATGGAAGCCTCCTTTTTATCATATTGTCCTGTTTGTTTCATCCTCTTCCTCTTCCTCTTTCCCTTCCAATTCCTCTGCCAACAGCCATATGTTGGAACTCAGACAAGTTGCTCTATCAATGATACTTCTGTCCTTTATACTTGTAATGATTATACTTGGTGTTATTCCTATTTGCTTGTAAGATCCAAGTCTCACAATGGTAACTTCTTTGTCTACAAGATATCATTAGGAAACAATGATTTGTCAATGGGACAAGTTTATTGTACATGTATGGGTCCTTTCTATGTGGCCATTTACTCGAACTACCAGGTTCAGTGGGGGGATGATTATGAAAAAATCGCAAATGATATTTTCCAGGGCTTCACAAGCTGTTCGACGTTGAGAAGTAAGAACTTGAACTATTCCATCGGTGATTCTTCTTCGATAGGCAAAACACTCGAAGTTCCGTTGCGATGCGCTTGTCCTACGGAAGTTCAGAGAGCTAATGGGATTGTCTCCTTGGGTGTGTATATGATACAACCAAATGAGAGCATTGGATCCATTGCAAATGATTTTGGGGTTGAGGAAGAAAGCATTTTGGGAGCAAACATGCTTTCAAATTCAACCCACATCTACCCATTTACGCCTCTTCTGCTTCCCTTCGACAAAAATAAGACTTGCAGCATACACCCATATTTCTCACTCAACTGCACTAACAGGCCTCACCAACTCAGTCTTATTGACATCATCATCATGATTGTAATAGGACAACAACTACTTACTAAGAAAAGAAGACGCAAACTTGGTAAGAAAAAGTTTTTCAAGCAAAATGGTGGCCACTTATTGCAGGAAAAACTACTCGAAGAAAGTGAGAGAGTAAAAATATATACACAAGAAGAATTGGAACAAGCAACGGATAACTATAATCAAAGTAGGTTTCTTGGTCAAGGAGGGTTTGGCACAGTTTACAAAGGGATACTCAATGACAACACCGTTGTTGCAATCAAAAGATCCAAGCAAATCGAGACAAATTGGATTGAACAATTCATCAATGAAGTTATTGTCCTCTCTCAAATTAACCACAGAAATATTGTTAAACTTCTAGGTTGTTGTTTAGAAACTGAGTTCCCTTTGTTGGTTTATGAATTTGTTTCTAACGGGACGCTTTCACACCATATTCACAAGGAAGATCTTGAAGAATCACCTTCTCTTTCTTGGGAAAATCGTCTCAATATCGCTTCCGAAGTTGCTGGAGCTATATCTTACATGCATTCGGCAGCTTCAATTCCTATTTTCCACAGAGATATCAAGTCTTTAAACATACTTTTGGATGATAATTATTGTGCAAAAGTTTCTGATTTTGGAACGTCAAGATTTGTTTCGTGTGATCAATCTCATTTGACTACAAAAGTGTTGGGAACTTTTGGATATATAGATCCTGAGTACTTCAGATCAAGTCAGTACACTGAAAAGAGTGATGTATATAGCTTTGGAGTCTTGATGGTAGAGCTTTTAACAGGGAAACTACCGGTCACTTTTGCCAGAAATGATGGTGAAAATCTATTAGAGTGCTTCATTTTATTGGAAAGTACTAACCAACTTGTTGAAATTCTAGATGCTACAATTGCCAAGGAGGAAAAGATGGAGGTTGTCAAGAACTTCGCAACACTCGCCATAAAGTGTTTAAGATCGAATGGAAAAGAAAGGCCTACAATGAAACAAGTATATTTAGAACTTGAGGGTTTGAGAAAGTCACAAAATTATTTAGGAATTGTTGAAGAAAGTCGTTCGAGAACTTTTTCATTGAACTCTTTCGAGATTAGTGATGACGAGCTTCTAAGATGA 1824 37.72 MEASFLSYCPVCFILFLFLFPFQFLCQQPYVGTQTSCSINDTSVLYTCNDYTWCYSYLLVRSKSHNGNFFVYKISLGNNDLSMGQVYCTCMGPFYVAIYSNYQVQWGDDYEKIANDIFQGFTSCSTLRSKNLNYSIGDSSSIGKTLEVPLRCACPTEVQRANGIVSLGVYMIQPNESIGSIANDFGVEEESILGANMLSNSTHIYPFTPLLLPFDKNKTCSIHPYFSLNCTNRPHQLSLIDIIIMIVIGQQLLTKKRRRKLGKKKFFKQNGGHLLQEKLLEESERVKIYTQEELEQATDNYNQSRFLGQGGFGTVYKGILNDNTVVAIKRSKQIETNWIEQFINEVIVLSQINHRNIVKLLGCCLETEFPLLVYEFVSNGTLSHHIHKEDLEESPSLSWENRLNIASEVAGAISYMHSAASIPIFHRDIKSLNILLDDNYCAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPVTFARNDGENLLECFILLESTNQLVEILDATIAKEEKMEVVKNFATLAIKCLRSNGKERPTMKQVYLELEGLRKSQNYLGIVEESRSRTFSLNSFEISDDELLR 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20502747 20505702 - Maker00029530 Lcy2g1540 626305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1540 607 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524(InterPro)
Lcy2g1540 607 Gene3D LysM domain 156 221 IPR036779 -
Lcy2g1540 607 SUPERFAMILY Protein kinase-like (PK-like) 285 572 IPR011009 -
Lcy2g1540 607 ProSiteProfiles Protein kinase domain profile. 301 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1540 607 Gene3D Phosphorylase Kinase; domain 1 274 376 - -
Lcy2g1540 607 SMART serkin_6 301 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1540 607 FunFam Wall-associated receptor kinase 2 377 594 - -
Lcy2g1540 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g1540 607 SMART LysM_2 169 213 IPR018392 -
Lcy2g1540 607 ProSiteProfiles LysM domain profile. 168 212 IPR018392 -
Lcy2g1540 607 FunFam Wall-associated receptor kinase 2 274 376 - -
Lcy2g1540 607 Gene3D Transferase(Phosphotransferase) domain 1 377 593 - -
Lcy2g1540 607 CDD LysM 169 206 IPR018392 -
Lcy2g1540 607 Pfam Protein kinase domain 301 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1540 607 Pfam LysM domain 170 213 IPR018392 -
Lcy2g1540 607 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 45 578 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy2g1540 607 CDD STKc_IRAK 307 575 - -
Lcy2g1540 607 Coils Coil 280 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1534 Lcy-Chr2:20265714 Lcy2g1540 Lcy-Chr2:20502747 1.29E-263 dispersed
Lcy2g1540 Lcy-Chr2:20502747 Lcy9g2377 Lcy-Chr9:48062212 6.52E-113 dispersed
Lcy2g1538 Lcy-Chr2:20416519 Lcy2g1540 Lcy-Chr2:20502747 2.23E-236 proximal
Lcy2g1540 Lcy-Chr2:20502747 Lcy2g1541 Lcy-Chr2:20557177 1.28E-264 tandem
Lcy2g1540 Lcy-Chr2:20502747 Lcy3g0245 Lcy-Chr3:7572141 7.77E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65747 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1540 - - - 0.0