Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1541 ATGGAGGCTTCTTCTCCTTGCTATGTTTTTTCTCTCATCTTCTTCCTTTTCTTCTTCCTTCGAGAATCCGTCTGCCAGTTTGCATATGTCGGAAATGGAAGCTGTTCTATCAATGATACTTCAACGCCAAAAGAGTACCTTTGTGTTGATTCTATTATTGAGTCATGTGATTCATATTATCTAACCTTCAAATCTCCACCTCATTCTTATTACTTTTCTTACACCAATATCACACTAGGGAACAATATTTTGTTTAGCACTTACATTTATCCTTGTGAATGTTTGGGTGGTTCTTTTCAGAATTTACTCTATTATACTATTGAGAGTGGTGATAGTTATGAGAAAATAGTAAACGACTATTTTCAAGGCTTGACGAGCTGCTCGGCACTAAGAACTCAAAACCATGACTTTGCTATCAATAGTTCTTCTTCCATAGGTAGACAAATTGTAGTTCCTTTGCGATGTGCTTGTCCAACAAAAGGTCAACAAGCAAATGGAACTGAGTCGTTGGCTATGTATGTGCTACAACCCAATCAAACAATTGGATCTGTTGCGAGGGACTTTGGGGTTGAGAAAGAAATCGTCTTGGAAGCAAACAACCTTTCCAACTCAAGCCACGCCTACCCTTTCATGCTTATTTTGGTTCCCTTGGGCAAAGATGATATTTGCAGAATATTTGGTTGTGACTCTAGGTGGCGGATCCAGAACTTGATGCTAGGGGGTGGACAACTTTATATTGGTTTGATTATAGTATTACTCGGTTGTTTCATTTGTGGATGCAAAGGAAATCAAGTACTCATTAAGAAAAGAAGACGTAAGCTTGGTAAGAAAAAGTTCTTCAAGCAAAATGGTGGCCTCTTGTTGCAACAAAAACTACTCCAAGATAGTGAGAGGGTAAAAATATTTACACAGGAAGAACTCGAACAAGCAACGGATAACTATAGTCAAAGTAGGTTTCTTGGTCAAGGAGGATTTGGCACGGTTTACAAAGGGATACTCTGCGACAACACGCTCGTTGCAATCAAAAGGTCCAAACAAATTGAGGAAAATTGGATCGAACAATTCATTAATGAAGTTATTATCCTCTCTCAAATTAACCACAGAAATATTGTTAGACTTCTGGGTTGTTGTTTAGAAACTGAGTTCCCTTTGTTAGTCTATGAATTTGTTTCTAACGGGACGCTTTCACACCATATTCACAGGGAAGATCCTCAAGAATCACCTTCTCTTTCTTGGGAAAATCGTCTCAATATTGCTTCTGAAGTTGCAGGAGCTATATCTTACATGCATTCTGCGGCTTCAATTCCTATTTTTCACAGAGATATTAAGTCTTTAAATATTCTTTTGGACGATAATTTTAGTGCAAAGGTTTCTGATTTTGGAACATCAAGATTTGTGTCTTGCGATCAATCTCATTTGACCACGAAAGTGTTGGGAACTTTTGGATATATAGATCCTGAGTACTTCAGATCAAGTCAGTACACTGAAAAGAGTGATGTATATAGCTTCGGAGTCTTGTTGGTAGAACTTTTAACAGGGAAGCTACCTGTCACTTTTGCCAAAAATGGTGGTGGGAATCTATTGGACTACTTCATTTCACTGGAAATGACTAATCAACTTGTTGAAATTCTTGATGTTACAGTTGCAAAGGAAGAAATGATGGAGGTGGTGAACAATGTCGCGATACTTGCCATAAAATGTTTAAGATCAAATGGGAGAGAAAGGCCTACAATGAAACAAGTATATTTGGAATTGGAAGGATTGAGAAGGCCTCAAGATTGTTTAGGAATTGCTGAAGAAAGTCATTCAAGAACTTTTTCATTGCACTCATTCGAGAGTAGTGACGACGAGCTTCTAAGATAA 1863 37.9 MEASSPCYVFSLIFFLFFFLRESVCQFAYVGNGSCSINDTSTPKEYLCVDSIIESCDSYYLTFKSPPHSYYFSYTNITLGNNILFSTYIYPCECLGGSFQNLLYYTIESGDSYEKIVNDYFQGLTSCSALRTQNHDFAINSSSSIGRQIVVPLRCACPTKGQQANGTESLAMYVLQPNQTIGSVARDFGVEKEIVLEANNLSNSSHAYPFMLILVPLGKDDICRIFGCDSRWRIQNLMLGGGQLYIGLIIVLLGCFICGCKGNQVLIKKRRRKLGKKKFFKQNGGLLLQQKLLQDSERVKIFTQEELEQATDNYSQSRFLGQGGFGTVYKGILCDNTLVAIKRSKQIEENWIEQFINEVIILSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSHHIHREDPQESPSLSWENRLNIASEVAGAISYMHSAASIPIFHRDIKSLNILLDDNFSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLLVELLTGKLPVTFAKNGGGNLLDYFISLEMTNQLVEILDVTVAKEEMMEVVNNVAILAIKCLRSNGRERPTMKQVYLELEGLRRPQDCLGIAEESHSRTFSLHSFESSDDELLR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20557177 20561345 - Maker00029569 Lcy2g1541 626306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1541 620 CDD STKc_IRAK 320 588 - -
Lcy2g1541 620 SMART LysM_2 104 152 IPR018392 -
Lcy2g1541 620 SMART LysM_2 172 216 IPR018392 -
Lcy2g1541 620 FunFam Wall-associated receptor kinase 2 390 607 - -
Lcy2g1541 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g1541 620 FunFam Wall-associated receptor kinase 2 287 389 - -
Lcy2g1541 620 ProSiteProfiles LysM domain profile. 103 151 IPR018392 -
Lcy2g1541 620 Pfam LysM domain 173 216 IPR018392 -
Lcy2g1541 620 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Lcy2g1541 620 Pfam Protein kinase domain 314 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1541 620 SUPERFAMILY Protein kinase-like (PK-like) 298 585 IPR011009 -
Lcy2g1541 620 ProSiteProfiles LysM domain profile. 171 215 IPR018392 -
Lcy2g1541 620 Gene3D LysM domain 159 221 IPR036779 -
Lcy2g1541 620 SMART serkin_6 314 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1541 620 Gene3D Phosphorylase Kinase; domain 1 287 389 - -
Lcy2g1541 620 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 89 593 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy2g1541 620 Coils Coil 293 313 - -
Lcy2g1541 620 Gene3D Transferase(Phosphotransferase) domain 1 390 604 - -
Lcy2g1541 620 ProSiteProfiles Protein kinase domain profile. 314 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1538 Lcy-Chr2:20416519 Lcy2g1541 Lcy-Chr2:20557177 1.02E-247 dispersed
Lcy2g1541 Lcy-Chr2:20557177 Lcy9g2377 Lcy-Chr9:48062212 6.34E-114 dispersed
Lcy2g1540 Lcy-Chr2:20502747 Lcy2g1541 Lcy-Chr2:20557177 1.28E-264 tandem
Lcy11g1206 Lcy-Chr11:34518437 Lcy2g1541 Lcy-Chr2:20557177 6.13E-43 transposed
Lcy12g0901 Lcy-Chr12:13013602 Lcy2g1541 Lcy-Chr2:20557177 4.83E-59 wgd
Lcy13g1359 Lcy-Chr13:31660266 Lcy2g1541 Lcy-Chr2:20557177 3.95E-48 wgd
Lcy2g1541 Lcy-Chr2:20557177 Lcy9g0533 Lcy-Chr9:16624107 1.17E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65748 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1541 - - - 0.0