Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1554 ATGAGGACTGTGTTCTTCACATCTCCAACTTCTCCTTCAACCTCCACCACGCCGCCCCACACTTTATCCGATTCCTTCCTACAAGAAACCATCCAAATCGCAGAATCATTTGTCATTACTGACACCGATTCTTCGTTTCAACAGGATCCTCATTATGCCCGCCGCTACATCCAGGCCGTTACCAGCTTGCATTCCGCCATGCGCCGCCTCGTTTCTCTGGATTCCGCCTCCGTGAAGCTCGTTCATGCTCACGACTTGATGAGGACAGCTATGGACAGGCTTCAGGTCGAGTTCCATCGGATTTTGTCCAACAATAGGGAGTATCTCTATCCTGAATCTGTTTCCAGCGTTCACTCGCGGAGATCGAGTTGTTCTGATTTTGAGGCGGAATCGGAGGATGAGTTTCGTTTTGCTGACGAATCCATTCTGGAAGTTGAGCGTGTTTCGATGACTGCCATGGCGGATTTGAAAGCCATTGCGGACTGTATGATCTTCACCGGCTATGGCAGAGAATGCGTCAAGGTTTACAAAACCGTAAGAAAATCGATAGTCGATGAGAGTCTCTACAACTTGGGGATTGAGAGGATGGATATGTCGAAAGTGCAGAAGATGGATTGGGAGATTCTGGAGATGAAGATCAAACACTGGTTGAAATCGGTGAAAACCGCAGTGAATTCTCTGTTCCACGGAGAGAAAATTCTTTGCGATTACGTCTTCTCAACTTCCACGCCAATCAGAGAATCTTGCTTCGCCGAAATTTCAAAAGACGCCTCGATGATTCTGTTCAGTTTTCCAGAATTAGTAGCCAAATACAAGAAATCTCCCGAGAAAATCTTCACTACTTTAGATCTATACGAAGCCCTAGCCGAGCTCTGGCCAGAAATCGAATTCAGCTTCTCGTCTATTCCAACGTCAATGATCAAATCACAAACAGACAATTCACTAATCAAACTCGGAGAAAACATTCGCGCATTACTCACCGACTTCGAAACTGCAATTCAGAAAGAGTCATCGAAATCGCCAGTTCCAAAAGGCGGAGTTCATCCACTCACACGCTACGTGATGAACTACCTCTCGTTTCTATCCGATTACAGAGGGATTCTCAACCACATAGTACCAGATTCGCCAGTAGCAGAACAATTACCGTTACCAGAATCGTACTACGGCCGACGGAATCAAATCGATTCTCCAATTACCTTACGATTCGTCTGGTTGATCCTTGTCCTCCTCTGCAAAATCGACGGAAAATCAGAGATGTACAACGACATTGCCTTATCGTACCTGTTCTTGGCCAACAATCTCCGGTACATCGTCGGAAAAGTACGCGGATCGAACCTCCGATTCGTTCTCGGCAGCGAGTGGATCGAAACTCACGAAACGAAGGTGAAGGAGTACGTCCAAAAGTACAAGAAGATGGGATGGAGTGAGGTATTGGCGTCGCTGCCGGCGGCGGCGACGAAGATGACAGCGGAGGAAGCGAGAGAATGTTTTAGAAATTTCAACAGAGCTTTCGAAGAGACGTACAGGAAACAAGCCTCGTGGTTCGTACCCGAACCGAAGCTTCGGGATGAGATAAAGATATTGGTGGCCAAGGATCTTGGGGGTTTGTACGGTGAGTTTTATTTGAAGTACGGGACTCGCTTGGGTCGGGTTTTCTGGTCGGATCCTGTTGTCCGGTTTTCACCCGATGATTTGGGAAATTATTTATCGGATTTGTTTTATGGGAGTGGAGATGGAAGTATTGGGAGTGGGTCTTCGTCCTCTCGAGCGAGGATACTTGGTTGA 1785 47.11 MRTVFFTSPTSPSTSTTPPHTLSDSFLQETIQIAESFVITDTDSSFQQDPHYARRYIQAVTSLHSAMRRLVSLDSASVKLVHAHDLMRTAMDRLQVEFHRILSNNREYLYPESVSSVHSRRSSCSDFEAESEDEFRFADESILEVERVSMTAMADLKAIADCMIFTGYGRECVKVYKTVRKSIVDESLYNLGIERMDMSKVQKMDWEILEMKIKHWLKSVKTAVNSLFHGEKILCDYVFSTSTPIRESCFAEISKDASMILFSFPELVAKYKKSPEKIFTTLDLYEALAELWPEIEFSFSSIPTSMIKSQTDNSLIKLGENIRALLTDFETAIQKESSKSPVPKGGVHPLTRYVMNYLSFLSDYRGILNHIVPDSPVAEQLPLPESYYGRRNQIDSPITLRFVWLILVLLCKIDGKSEMYNDIALSYLFLANNLRYIVGKVRGSNLRFVLGSEWIETHETKVKEYVQKYKKMGWSEVLASLPAAATKMTAEEARECFRNFNRAFEETYRKQASWFVPEPKLRDEIKILVAKDLGGLYGEFYLKYGTRLGRVFWSDPVVRFSPDDLGNYLSDLFYGSGDGSIGSGSSSSRARILG 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20892413 20894197 - Maker00029536 Lcy2g1554 626319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1554 594 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 575 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy2g1554 594 Pfam Exocyst complex component Exo70 N-terminal 28 103 - -
Lcy2g1554 594 MobiDBLite consensus disorder prediction 1 22 - -
Lcy2g1554 594 Pfam Exo70 exocyst complex subunit C-terminal 214 571 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy2g1554 594 SUPERFAMILY Cullin repeat-like 43 573 IPR016159 -
Lcy2g1554 594 Gene3D Exocyst complex component Exo70 37 579 - -
Lcy2g1554 594 FunFam Exocyst subunit Exo70 family protein 39 580 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1416 Lcy-Chr1:13712512 Lcy2g1554 Lcy-Chr2:20892413 2.63E-129 dispersed
Lcy2g1554 Lcy-Chr2:20892413 Lcy8g1841 Lcy-Chr8:44721348 3.95E-287 dispersed
Lcy2g1554 Lcy-Chr2:20892413 Lcy2g1606 Lcy-Chr2:22819944 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1554 K07195 - csv:101212978 772.696