Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1606 ATGAGGACTGTGTTCTTCACATCTCCAACTTCTCCTTCAACCTCCACCACGCCGCCCCACACTTTATCCGATTCCTTCCTACAAGAAACCATCCAAATCGCAGAATCATTTGTCATTACTGACACCGATTCTTCGTTTCAACAGGATCCTCATTATGCCCGCCGCTACATCCAGGCCGTTACCAGCTTGCATTCCGCCATGCGCCGCCTCGTTTCTCTGGATTCCGCCTCCGTGAAGCTCGTTCATGCTCACGACTTGATGAGGACCGCCATGGACAGGCTTCAGGTCGAGTTCCATCGGATTTTGTCCAACAATAGGGAGTATCTCTATCCTGAATCTGTTTCCAGCGTTCACTCGCGGAGATCGAGTTGTTCTGATTTTGAGGCGGAATCGGAGGATGAGTTTCGTTTTCCTGACGAATCGATTCTGGAAGTTGAGCGAGTTTCGATGACTGCCATGGCGGATTTGAAAGCCATTGCGGACTGTATGATCTTCACCGGCCATGGCAGAGAATGCGTCAAGGTTTACAAAACCGTAAGAAAATCGATCGTCGACGAGAGTCTCTACAACTTGGGGATTGAGAGGATGGATATGTCGAAAGTGCAGAAGATGGATTGGGAGATTCTGGAGGTGAAGATCAAACGCTGGTTGAAATCGGTGAAAACCGCAGTGAAATCTCTGTTCCACGGAGAGAAAATTCTTTGCGATTACGTCTTCTCAACTTCCACACCAATCAGAGAATCTTGCTTCGCTGAAATTTCAAAAGACGCCGCCATGATTCTGTTCAGTTTTCCAGAATTGGTAGCCAAATACAAAAAATCTCCCGAGAAGATCTTCACTACTTTAGATCTATACGAAGCCTTAGCCGAGCTCTGGCCAGAAATCGAATTCATCTTCTCATCTGTTCCAACGTCAATGATCAAATCACAAAAAGACAATTCACTAATCAAACTCGGAGAAAACATTCGCGCATTACTCACCGACTTCGAAACCGCAATTCAGAAAGAGTCATCGAAATCGCCAGTTCCAAACGGCGAAGTTCATCCACTCACACGCTACGTGATGAACTACCTCTCGTTTCTATCCGATTACAGAGGGATTCTCAACGACATAGTACCAGATTCGCCATTAGTAGAACAATTACCGTTACTAGAATCGTACTACGGCCGGCGAAATCAAATCGATTCTCCGATTACCTTACGATTCGCCTGGTTGATCCTTGTCCTCCTCTGCAAACTCGACGGAAAATCAGAGATGTACAAGGACATTGCCTTATCTTACTTGTTCTTGGCCAACAATCTCCGGTACGTCGTCGGAAAAGTACGTGGATCGAACATCCGATTCGTTCTCGGCGGCGAGTGGATCGAAACTCAGGAGACGAAGGTGAAGGAGTACGTTGAAAAGTACAAGAGGACACTTGGTTGA 1425 46.67 MRTVFFTSPTSPSTSTTPPHTLSDSFLQETIQIAESFVITDTDSSFQQDPHYARRYIQAVTSLHSAMRRLVSLDSASVKLVHAHDLMRTAMDRLQVEFHRILSNNREYLYPESVSSVHSRRSSCSDFEAESEDEFRFPDESILEVERVSMTAMADLKAIADCMIFTGHGRECVKVYKTVRKSIVDESLYNLGIERMDMSKVQKMDWEILEVKIKRWLKSVKTAVKSLFHGEKILCDYVFSTSTPIRESCFAEISKDAAMILFSFPELVAKYKKSPEKIFTTLDLYEALAELWPEIEFIFSSVPTSMIKSQKDNSLIKLGENIRALLTDFETAIQKESSKSPVPNGEVHPLTRYVMNYLSFLSDYRGILNDIVPDSPLVEQLPLLESYYGRRNQIDSPITLRFAWLILVLLCKLDGKSEMYKDIALSYLFLANNLRYVVGKVRGSNIRFVLGGEWIETQETKVKEYVEKYKRTLG 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22819944 22821368 + Maker00029544 Lcy2g1606 626371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1606 474 MobiDBLite consensus disorder prediction 1 21 - -
Lcy2g1606 474 Pfam Exocyst complex component Exo70 N-terminal 28 103 - -
Lcy2g1606 474 SUPERFAMILY Cullin repeat-like 43 471 IPR016159 -
Lcy2g1606 474 Pfam Exo70 exocyst complex subunit C-terminal 214 471 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy2g1606 474 Gene3D Exocyst complex component Exo70 37 473 - -
Lcy2g1606 474 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 472 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1606 Lcy-Chr2:22819944 Lcy8g1841 Lcy-Chr8:44721348 2.74E-229 dispersed
Lcy2g1554 Lcy-Chr2:20892413 Lcy2g1606 Lcy-Chr2:22819944 0 transposed
Lcy11g0247 Lcy-Chr11:3416476 Lcy2g1606 Lcy-Chr2:22819944 2.55E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1606 K07195 - csv:101212978 625.165