Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1629 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCAAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGTCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCCCTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATACTCGACAACGAAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTGGTGAAGAAGATAGACCGGTGGAACAACCGAAATTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGACGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGGCAAGATGCTCCATCTGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCTCCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGAACTTGCAGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAACTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCAGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACCCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGCTAACACCTTCAGCAACTCCTGGTGGCGTTGGTCTCACTCCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGACACGCATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGAAATCTTAGCCTAGGATTGGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCACGGCCTCCTACTGCTTCTTTGGAGCTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTCGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTATTAGAGCATGATAATGCGAAGTACCCAATTGACGAAAAGGTCAACAGGGAGAAAAAGAAAGGTTCCAAGCGCACTGGAAATGGACCTACTGCAGCCATCCCCTCAATAGATGATTTTGAAGAAACTGAGATGGAAGAGGGTGTCACTGATATCATGGAGGAAGCCGAGGAATGTGAGTACACATTTGTTGTGCCAGTGTTGATTTTAGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAGTCCTTAGATGAATTTGTGGAAGCTCACAAAACCTGCTTGAGTGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGCGTTGCTGGAAACCATGAGAAACTAGCTGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGGTATATATTATTATTGGAATTATCACAGCTTTTTTCTCTACATCTTGTGTTCCACTTCTTCCTGGATTGCCTCAGCATTTTCCTCTCTTTAGAAGGAGGCAAGAGGAGGACATTGATTATTGGTTGTTGGATTGCGGTTGCTTATTCCCTCGGGAGTCTACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCGACTTTCAAGCAGATGGACACTGCAGCAACGGAGCTTGAGTGCTTCGAAGCTCTTCAAAAGCAAGAGCTGTCAGCTGCTTCGCACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAACCTTTTGGCGGACTTGGAAAAGATGCAGAAAGTCATGGATGAGCGCAAGGCACAAGCACAAAAGGAAGAAAAAATCGCAGCAGAGAATCATGCTCTTCAGTTGGCTGAGGCTGAGGCTAATCAAACTGTTGGAGAAAATGCTGATAGTTCTGAACCTATGCCCGCATTAGCAGTTGATCAGGAAAACTCTGCCTCATCTCCCAATGAATTAACAGGTGAACAAGTGAACTCGTCCATGGGACATAAACATGAAACTTCTAATGCCATGGATATTGACGCAGAGGCAGAAAATGCAGCGACGAGCTCGGATGTTGGCTTATCTGATAACAAACTACCTTCTGCAGCAGGAGAGAATGCATCATTGCATGACAATGGTTTAGAAGATTCTGATAAAAGTCAAACCATTGATGTTCCTACTCCAGAACTCTCAGGCCCTTCTGCAAATGGCAACCCAGAAGTGACCGTTGCAGTGGAAAATAAAAGCAACGATTCGGTTGATGAAGCAGCTACAGAAAATGCCGAATGTAGTACCGATATTGTTGAGGAAGTCAAAGATGTTGAAACTCAGCAGCCTGTGATTGAAGCTGGAAACTCAGATATGAATTCAACTGATCTGGATTCTGGTGCACCTGTATCTTCTAATGAGGACGATCCTGCCAATAATGATAACATGGAAGCCCCTCGTGGCGAAGGGGAAGGAACGGAATCGAATGCCTAG 3327 44.36 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNREKKKGSKRTGNGPTAAIPSIDDFEETEMEEGVTDIMEEAEECEYTFVVPVLILADYLIKEEARYLCVAMGHENESLDEFVEAHKTCLSDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYEVYIIIGIITAFFSTSCVPLLPGLPQHFPLFRRRQEEDIDYWLLDCGCLFPRESTRSKQSLWPQIEATFKQMDTAATELECFEALQKQELSAASHRISGIWEEVQKQKELERTLQLRYGNLLADLEKMQKVMDERKAQAQKEEKIAAENHALQLAEAEANQTVGENADSSEPMPALAVDQENSASSPNELTGEQVNSSMGHKHETSNAMDIDAEAENAATSSDVGLSDNKLPSAAGENASLHDNGLEDSDKSQTIDVPTPELSGPSANGNPEVTVAVENKSNDSVDEAATENAECSTDIVEEVKDVETQQPVIEAGNSDMNSTDLDSGAPVSSNEDDPANNDNMEAPRGEGEGTESNA 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23395667 23406275 - Maker00029653 Lcy2g1629 626394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1629 1108 Gene3D - 5 59 - -
Lcy2g1629 1108 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 807 883 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 599 628 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 929 953 - -
Lcy2g1629 1108 Coils Coil 167 187 - -
Lcy2g1629 1108 Pfam Myb-like DNA-binding domain 10 70 - -
Lcy2g1629 1108 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 157 176 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 400 414 - -
Lcy2g1629 1108 Coils Coil 872 908 - -
Lcy2g1629 1108 CDD SANT 10 53 IPR001005 -
Lcy2g1629 1108 Gene3D - 60 114 - -
Lcy2g1629 1108 FunFam CDC5 cell division cycle 5-like 60 120 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 967 1023 - -
Lcy2g1629 1108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 928 953 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 1052 1108 - -
Lcy2g1629 1108 CDD SANT_CDC5_II 55 106 IPR047240 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 382 421 - -
Lcy2g1629 1108 Pfam pre-mRNA splicing factor component 407 646 IPR021786 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 1001 1023 - -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 213 234 - -
Lcy2g1629 1108 SMART sant 58 105 IPR001005 -
Lcy2g1629 1108 SMART sant 6 55 IPR001005 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 1061 1090 - -
Lcy2g1629 1108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lcy2g1629 1108 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lcy2g1629 1108 FunFam CDC5 cell division cycle 5-like 5 59 - -
Lcy2g1629 1108 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lcy2g1629 1108 MobiDBLite consensus disorder prediction 113 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1629 K12860 - - csv:101206265 1699.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1629 Lcy-Chr2:23395667 Lcy7g0263 Lcy-Chr7:2271018 4.30E-12 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g1629 . 1 927 MYB-Related Transcription Factor Family AT1G09770 70.1 0.0e+00 1181.0
Lcy2g0399 . 382 859 MYB-Related Transcription Factor Family AT3G18100 55.3 1.0e-151 534.6
Lcy11g0316 . 3 260 MYB-Related Transcription Factor Family AT3G18100 65.5 4.8e-101 366.3
Lcy2g0399 . 382 859 MYB-Related Transcription Factor Family AT3G18100 55.3 1.0e-151 534.6
Lcy11g0316 . 3 260 MYB-Related Transcription Factor Family AT3G18100 65.5 4.8e-101 366.3
Lcy2g1629 . 1 927 MYB-Related Transcription Factor Family AT1G09770 70.1 0.0e+00 1181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19771 None None None None Lcy TF