Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1678 ATGGGTGTGGAACAAAACAATCACGATGCAGAGGAGGGGACGTTGGAGATTGGCATGGAATATAGAACAGTCTCTGGTGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAAATTGTTAATATTCGTCTTGGTGATGGAACAACCAGACGTGGTCAAGTCCTGGAAGTTGATGGGGAGAAAGCTGTTGTCCAGGTGTTTGAGGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAGACTCCAGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGTCCTCCTATCTTGCCTGAGGCTTACTTGGATATTTCAGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCTGAGGAGATGATACAGACTGGGATTTCTACGATCGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAAGCTGGCTTGGTAAAGCGGTTGGAGAAATCTAACGATCTCCTTGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTTAAACGTGATTTTGAGGAAAATGGTTCAATGGAGAGAGTGACTCTATTTTTGAACTTGGCTAATGATCCTACAATTGAGCGCATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGAGAGGTGTCTGCTGCACGAGAGGAAGTACCTGGAAGGCGTGGGTACCCTGGTTATATGTATACCGATCTTGCTACAATCTATGAAAGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACACAAATCCCAATCCTCACTATGCCAAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACTGAGGGACAGATCTACATCGATAGGCAGCTCTACAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCACTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTAGAGTTCTTGGACAAATTTGAGAGGAAGTTTGTCACTCAAGGAGCGTACGATACTCGAAACATTTTTCAATCGCTTGATCTGGCATGGACACTGCTTCGCATTTTCCCTCGCGAACTTCTCCATCGTATACCTGCGAAGACTCTTGATCAGTTTTACAGCCGAGAATCTGCAAATTGA 1467 44.04 MGVEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRESAN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25004248 25023221 + Maker00035394 Lcy2g1678 626443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1678 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524(InterPro)
Lcy2g1678 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Lcy2g1678 488 FunFam V-type proton ATPase subunit B, brain 29 488 - -
Lcy2g1678 488 NCBIfam V-type ATPase subunit B 20 487 IPR005723 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy2g1678 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Lcy2g1678 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 16 486 IPR022879 GO:0007035(PANTHER)|GO:0046961(PANTHER)
Lcy2g1678 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524(InterPro)
Lcy2g1678 488 Gene3D - 29 488 - -
Lcy2g1678 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Lcy2g1678 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Lcy2g1678 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Lcy2g1678 488 Pfam C-terminal domain of V and A type ATP synthase 383 482 - -
Lcy2g1678 488 CDD V_A-ATPase_B 92 385 - -
Lcy2g1678 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1657 Lcy-Chr2:24187735 Lcy2g1678 Lcy-Chr2:25004248 0 dispersed
Lcy2g1678 Lcy-Chr2:25004248 Lcy3g0877 Lcy-Chr3:31631699 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1678 K02147 - csv:101211838 961.059