Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1679 ATGGATTTTAGGGTTTCAATTTGGACGGTGGTTATGGTGCTGTTATTGAGATGGGCGTGGAGATTTTTGAACTGGGTTTGGTTGAAGCCCAAGAAGCTTGAAAAGTGCCTCAGAGACCAAGGATTCGCCGGAAATCCTTACCGGCTTTTCTCCGGCGACATGAAGGAAAGAGCCGCCATGATGCAGCACGCCAAATCCAAACCCATGAATTTCTCCCATGATATTGCTCCACGTGTCATCCCCTCCATATATCACACCATCCACAAATATGGGAAGAAGTCGTTGATGTGGATTGGACCGTATCCAAGAGTGCACATCATGGACCCTGAGCAATTTAAAGCTGCCTTTTCTCTAACCTCCGATATTCAAAAGCCAAGTTTTAACCCTCTTGCTAGGTTGCTTTTTGATGGACTTATTAATCATGAAGGACAAAAATGGGCTAAGCATAGAAAGATAATCAATCCTGCATTTCATTTCGAGAAGTTGAAGAGTTGCAATGAGATAATTAGCAAATGGGAAAGAATGATCTCAGAACACGGATTTTGTGAATTGGATGTGATGCCTCATTTGCAAAATTTGGCAGCTGATGTCATTTCTCGAACCGCATTTGGAAGTAGTTATGAAGAAGGAAAAATCATCTTTGAACATCTAAAAGAATTGACTAATTTGGTCATTGAAGTTAATTCTAGAGTTTACATACCCGGATGGAGGTTTCTACCAACCAAGTCTAACAATAGAATGAAAAAGATAAGTAATGAAATAAAAACTCTACTCTTTAGCCTTGTCAACAAAAGGCATACGGCTATGAAGGCAGGTGAAACCATGCCTACTGATCTATTAAGCATCCTCGTACAATCAAATTTCAAAGAAATTCAAGAACATGGAAACAACAAGAATATTGGAATGAGCATACAAGAAATGGTCGAAGAATGTAGGGTTTTCTATTTTGCTGGCCAAGAAACCACTGCGGTGTTACTAGTTTGGACCATGGTTTTGTTGAGCTCATATTCAAAATGGCAACATCGGGCAAGAGCAGAAGTCTTAGAAGTCTTTGGTAACAACAAGCCAGATTTTGATGGTTTAAATCGTCTAAAAATTGTTACTATGATTTTGAACGAGGTTCTCAGGCTATATCCACCAGCAGGGATGTTTACTCGTCTTGTTCAAAAGGAAACAAGGCTTGGAAATTTGACTTTACCAGCTGGGGCGATGTTGAGTTTCCCAATTATTCTTTTACATCATGATCAAGAGCTATGGGGTGAAGATGCAAATGAATTTAATCCAGAAAGATTCGCTGAGGGAGTTTCAAAAGCAACAAAAAATCAAACTGGCTTCTTCCCATTCGGATGGGGTCCTCGAATATGCATTGGACAAAATTTTGCAATGATTGAGGCCAAAATTGCATTGGCCATGATCCTACAGCACTTCTCATTTGAGCTTTCTTCTTCGTATACTCATGCTCCTACATCCATTTTAACTATTCAACCTCAACATGGAGCTCATATCATCCTACATAAACTTTAA 1524 39.63 MDFRVSIWTVVMVLLLRWAWRFLNWVWLKPKKLEKCLRDQGFAGNPYRLFSGDMKERAAMMQHAKSKPMNFSHDIAPRVIPSIYHTIHKYGKKSLMWIGPYPRVHIMDPEQFKAAFSLTSDIQKPSFNPLARLLFDGLINHEGQKWAKHRKIINPAFHFEKLKSCNEIISKWERMISEHGFCELDVMPHLQNLAADVISRTAFGSSYEEGKIIFEHLKELTNLVIEVNSRVYIPGWRFLPTKSNNRMKKISNEIKTLLFSLVNKRHTAMKAGETMPTDLLSILVQSNFKEIQEHGNNKNIGMSIQEMVEECRVFYFAGQETTAVLLVWTMVLLSSYSKWQHRARAEVLEVFGNNKPDFDGLNRLKIVTMILNEVLRLYPPAGMFTRLVQKETRLGNLTLPAGAMLSFPIILLHHDQELWGEDANEFNPERFAEGVSKATKNQTGFFPFGWGPRICIGQNFAMIEAKIALAMILQHFSFELSSSYTHAPTSILTIQPQHGAHIILHKL 507
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 25043966 25050393 + Maker00035388 Lcy2g1679 626444
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1679 507 CDD CYP72 80 503 - -
Lcy2g1679 507 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PANTHER CYTOCHROME P450 FAMILY MEMBER 10 499 IPR050665 GO:0004497(PANTHER)
Lcy2g1679 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy2g1679 507 Pfam Cytochrome P450 88 482 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 FunFam Cytochrome P450 734A1 27 507 - -
Lcy2g1679 507 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 Gene3D Cytochrome P450 73 506 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g1679 507 SUPERFAMILY Cytochrome P450 76 505 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1679 Lcy-Chr2:25043966 Lcy9g1421 Lcy-Chr9:39208785 1.32E-274 dispersed
Lcy2g1679 Lcy-Chr2:25043966 Lcy2g1758 Lcy-Chr2:28016628 1.37e-313 wgd
Lcy2g1679 Lcy-Chr2:25043966 Lcy9g0284 Lcy-Chr9:7371433 2.28E-275 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1679 - - - 0.0