Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1692 ATGGCAGCTTCATCGATGGCTCTGTTTTCCCCATCTCTGGTCGCCCAAGCCGTGAAATTGTCCCTCGCCGCCTCTTACCTCTTCGGCGACAGCCGTGTCACCATGAGGAAAACTGCCGGCAAGCCCAAGCCCGTCTCCTCCGGAAGCCCATGGTACGACCCAGATTGCGTCAAGTACTTGGGCCCATTCTTCAGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCGACTACGACTGGGACACCATCGGCCTCTCCGCCGACCCCGAGACCTTCGCCAAGAACCGCGAGCTCGAAGTGATCCAATCGAGATGGGCCATGCTCGGGGCTCTTGGCCACGTGTTCCCTGAGCTCCCTCTCGCAACGACGTCAAATTCGACGACGCCGTGTGGTTCAAAGCCGGCTCGCAGATCTTCAGCGAAGGAGGTTGAAACTGGAGTTGCTATTGAGGGAATGACACTTGAAGGAGGAATTTTCCTTAGATTTGTATGGCGGGTGATCCAACGTGGTGGTGTTCATTGGGAGGAAGAAGAACGCGATTTGGAGCATCGTGCCGTTAGTTCTTCGAAATCCATAAAAACAGAGGAAATGCTGGAATTTGCCCAGAAATGCGACTGGGAAGGCAAAATGAAATGCGATAGCATTTCTGGAAAAACAGAGGCAGTTCCGAGTCTTCTGCGGGTCGTTGAAAGTCAAGAGTCAAATCTAGAGAGTCTTATGAAGGAGTACATGGCAAGAAACGATGCTGCAGTTAGAAATTTGGAAGTACAGTGTCGCAACGTCATCGCGACGCGGAGCTGCCGACGTCCTTCCCTAAGGGTCTCTTTCGAGAACTCGTCAGAATCAATATGGGTCTTCGAACCGGAGCGGCGACGGCGGAACTATGCAGGCTGCGGTAGTGACGGCGACGTTCGTTGGGTAGAGGAGAGCTTGGAGAAACGGTTGAGGGAAAAGGGGAATGGGTTGAGAAAGAGGGGGAAAGAGTGGAAGACAAAGAATCAAACCATATTGGGGAAGGGCTTTAAAGATGAAGAAGCTCATGTTTCTGTGATTGACCTGGACACAGCGTCGCAATGCTATGCCTTCAGATATGGAATGAATCTCTCGGATCAACATAGCGTCGAGACGCTATGGGTGCAGCGTCGAGACGCTGCAGCTTCTGCTTGGCGCCCACGAAATTTCCTTATTTGA 1194 53.1 MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPELPLATTSNSTTPCGSKPARRSSAKEVETGVAIEGMTLEGGIFLRFVWRVIQRGGVHWEEEERDLEHRAVSSSKSIKTEEMLEFAQKCDWEGKMKCDSISGKTEAVPSLLRVVESQESNLESLMKEYMARNDAAVRNLEVQCRNVIATRSCRRPSLRVSFENSSESIWVFEPERRRRNYAGCGSDGDVRWVEESLEKRLREKGNGLRKRGKEWKTKNQTILGKGFKDEEAHVSVIDLDTASQCYAFRYGMNLSDQHSVETLWVQRRDAAASAWRPRNFLI 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25394891 25409983 + Maker00002098 Lcy2g1692 626457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1692 397 Pfam Chlorophyll A-B binding protein 67 123 IPR022796 -
Lcy2g1692 397 Gene3D Chlorophyll a/b binding protein domain 58 200 - -
Lcy2g1692 397 SUPERFAMILY Chlorophyll a-b binding protein 50 122 - -
Lcy2g1692 397 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 5 119 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1692 Lcy-Chr2:25394891 Lcy8g1625 Lcy-Chr8:42832368 1.32E-55 dispersed
Lcy1g2574 Lcy-Chr1:47535321 Lcy2g1692 Lcy-Chr2:25394891 8.04E-07 wgd
Lcy11g0634 Lcy-Chr11:16386161 Lcy2g1692 Lcy-Chr2:25394891 1.98E-07 wgd
Lcy12g1055 Lcy-Chr12:18221404 Lcy2g1692 Lcy-Chr2:25394891 4.63E-08 wgd
Lcy12g1144 Lcy-Chr12:21760920 Lcy2g1692 Lcy-Chr2:25394891 4.60E-08 wgd
Lcy13g1032 Lcy-Chr13:22397800 Lcy2g1692 Lcy-Chr2:25394891 3.97E-14 wgd
Lcy2g1692 Lcy-Chr2:25394891 Lcy3g0592 Lcy-Chr3:22454878 2.34E-10 wgd
Lcy2g1692 Lcy-Chr2:25394891 Lcy4g1125 Lcy-Chr4:23031185 1.06E-07 wgd
Lcy2g1692 Lcy-Chr2:25394891 Lcy4g1428 Lcy-Chr4:35387744 9.93E-13 wgd
Lcy2g1692 Lcy-Chr2:25394891 Lcy6g1248 Lcy-Chr6:15037695 2.31E-29 wgd
Lcy2g1692 Lcy-Chr2:25394891 Lcy7g1305 Lcy-Chr7:18083029 4.45E-59 wgd
Lcy2g1692 Lcy-Chr2:25394891 Lcy8g0515 Lcy-Chr8:16907318 4.14E-08 wgd
Lcy2g1692 Lcy-Chr2:25394891 Lcy8g0589 Lcy-Chr8:20206435 1.64E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1692 K08912 - csv:101213845 202.601