Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g1721 | ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTCTTCGAGCAGATTCTGTCGGTGCCGCCGGCTTACGGCGGCGGAGGTGGCGGCGATGTGGTGTCTATGCCGATGGGGTTGCAACTTGGGTCCGGCGGCGGCGGCGGCGACGGTGGGTTGAGAGGGATGGGGTTGCAAGGAGGGATGGCTATGCCTTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGACAAGAGAGGTTTAGAGAAGAGCTTGATGCGCATAATAATAATACCACTAATAATGCTTCCTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGGTGCAGCACATGACCAGCTTGTTTCCGACCTTTGGACATTTGCAGACTCAACCACTCCGGCCACCGCCGCCCTTACATCTCCACCAGTCCTTTCATAATCAGACAACTCCGGGGACGGTTGTTGCAGTACCACAACCACCGCAAGTTCGTCCAAGAGTTCGAGCAAGACGAGGGCAAGCGACTGATCCTCACAGTATTGCAGAAAGGGTAATCTCATCTTTGAACTCTAAGAATATAAGTGGAGACCTCACTACTTATAAGATAAATGGGTTACTCCTCTCATTACCAATTGGTTTTGAGATGGAACCCTATTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAAGAGTTGGTTCCTAGTTGCAATAAGACTGATAGGGCGGCAATGCTCGACGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGCGGGGCGGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGTGGCAGCAATCAGCAAGCATGGGAAAAGTGGTCAAGTGATGGCACAGAGCAACAAGTAGCCAAATTGATGGAAGAAGATGTGGGAGCTGCCATGCAATTTCTACAATCTAAAGCTCTATGCATTATGCCCATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACCCATCATAGTCAAGCCAGAAATGAACACTCCCTAG | 1080 | 49.44 | MAGIPSEGLGDDFFEQILSVPPAYGGGGGGDVVSMPMGLQLGSGGGGGDGGLRGMGLQGGMAMPLGLNLEQGFLRQERFREELDAHNNNTTNNASSSSTASSGITERDSSVQHMTSLFPTFGHLQTQPLRPPPPLHLHQSFHNQTTPGTVVAVPQPPQVRPRVRARRGQATDPHSIAERVISSLNSKNISGDLTTYKINGLLLSLPIGFEMEPYLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGSNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIIVKPEMNTP | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 26722667 | 26730337 | + | Maker00002096 | Lcy2g1721 | 626486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g1721 | 359 | MobiDBLite | consensus disorder prediction | 138 | 152 | - | - | |
| Lcy2g1721 | 359 | MobiDBLite | consensus disorder prediction | 122 | 173 | - | - | |
| Lcy2g1721 | 359 | MobiDBLite | consensus disorder prediction | 86 | 109 | - | - | |
| Lcy2g1721 | 359 | Gene3D | - | 215 | 262 | IPR036638 | GO:0046983(InterPro) | |
| Lcy2g1721 | 359 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 86 | 338 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
| Lcy2g1721 | 359 | MobiDBLite | consensus disorder prediction | 85 | 109 | - | - | |
| Lcy2g1721 | 359 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 216 | 263 | IPR036638 | GO:0046983(InterPro) | |
| Lcy2g1721 | 359 | Pfam | Helix-loop-helix DNA-binding domain | 216 | 254 | IPR011598 | GO:0046983(InterPro) | |
| Lcy2g1721 | 359 | SMART | finulus | 209 | 259 | IPR011598 | GO:0046983(InterPro) | |
| Lcy2g1721 | 359 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 204 | 253 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g1721 | Lcy-Chr2:26722667 | Lcy4g2025 | Lcy-Chr4:46783341 | 4.01E-45 | dispersed | |
| Lcy9g2224 | Lcy-Chr9:46801103 | Lcy2g1721 | Lcy-Chr2:26722667 | 3.72E-06 | dispersed | |
| Lcy3g1560 | Lcy-Chr3:42640201 | Lcy2g1721 | Lcy-Chr2:26722667 | 1.16E-87 | transposed | |
| Lcy2g1721 | Lcy-Chr2:26722667 | Lcy6g1339 | Lcy-Chr6:18534214 | 1.11E-07 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19775 | None | None | None | None | Lcy | TF |
Pathway information