Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1808 ATGGACGATACCCATTCATTCAATGGTTTCTCCACTCTTCTTCACCATCCAGATTTCTCTCACTATGTTGAAATTGATCCCACTGGCAGATATGGAAGATACGATCAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTTTTAAAGACATTGAAACATAAGAATATCATGAAATTCTATACTTCTTGGGTCGACACTGCAAATAGGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGTTAATGTTAGAGCAGTGAAGCGATGGTGTAGACAGATCTTGAGGGGTCTTCTCTATTTACACAGCCAAAACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGATCTTGGTCTTGCTGCTATCCTCCGGAAATCGCATGCTGATCATTGCGTCGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGGGAAAAAACCAGATGCCTTGTATAAAGTGAAGGATCCGAGCATGCGGCAATTTGTCGAGAAATGCTTGGCACCAGTCTCTTGTAGACTTTCGGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGCAAGTCAAAACTTTCAGATTTTCGGGAAGAACTGGATGGTATTGCTTCTACTACAGCACAACCTTTCCTTGAACAAGAGAAAAGTTTGAGCTCGATTAATTACAGTTTGGAGGCCTCAGATGAATGGAGGTGTCGTACAGTTCCGACTGTACCCGATGGTATCGAACTTTTTGAGGACGAGGATAATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAGCATTGTTTTAAGACTTAGGATTGCAGAGAAAGAAGGGCATATTCGAAACATATATTTCCCATTTGACACCAAGAATGATACGGCATTGACAGTTGCCACCGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATCGCTTCCTTGGTACCGGAGTGGAAGCCGGGGCCTGGCATAGATGAAACACCTCGCATCTCCTATGATGGTGGTTGTCAAAGCTACGATGCTTCTAACCATCCATCTGAGAATCATTTGATAGGGAATAAGCGAAGTGGAGCTAAACTCTATCAGATTTTAAACTGCAGCACAGATGAATGTGCTACAGCAGACAGACATTTCGAGCAGGTCTCCCTCGAAGCAGATCAGCCTCCACAGCCTGTGGTAGATAGCACACCAAAAGTGTCCAGCCAGCATTATCAGCGAAACTCAGTCCATGAAAACCAAGCTCTTGATTCTCGTAGTTTTAGGCGAAGCCATTCTGATCAAAATTACAAGAAAACAGGCCAATCAATCGCTGTTGGGGATAAGAAAGAAAAGTTACTCGATAGCAAAGCCACTGTCATTGCAAGAACTTCACTCAGAAGCCTACTGGGTTCCCGATCGCTGTCTACGGTTTCGTCCTATTGTGAAGATAAATTTGCATCTCAAATCCATTGGGAAATTAGATGGCTTTGGAATTGA 1740 42.36 MDDTHSFNGFSTLLHHPDFSHYVEIDPTGRYGRYDQILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNVRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELGKKPDALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKSKLSDFREELDGIASTTAQPFLEQEKSLSSINYSLEASDEWRCRTVPTVPDGIELFEDEDNDQLENLDNSIKGKIREDGSIVLRLRIAEKEGHIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVPEWKPGPGIDETPRISYDGGCQSYDASNHPSENHLIGNKRSGAKLYQILNCSTDECATADRHFEQVSLEADQPPQPVVDSTPKVSSQHYQRNSVHENQALDSRSFRRSHSDQNYKKTGQSIAVGDKKEKLLDSKATVIARTSLRSLLGSRSLSTVSSYCEDKFASQIHWEIRWLWN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29933277 29936660 + Maker00032386 Lcy2g1808 626573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1808 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g1808 579 FunFam Probable serine/threonine-protein kinase WNK1 17 113 - -
Lcy2g1808 579 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 213 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy2g1808 579 MobiDBLite consensus disorder prediction 481 502 - -
Lcy2g1808 579 SMART serkin_6 32 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1808 579 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 344 399 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Lcy2g1808 579 MobiDBLite consensus disorder prediction 473 521 - -
Lcy2g1808 579 Gene3D Transferase(Phosphotransferase) domain 1 115 218 - -
Lcy2g1808 579 SUPERFAMILY Protein kinase-like (PK-like) 35 255 IPR011009 -
Lcy2g1808 579 ProSiteProfiles Protein kinase domain profile. 32 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1808 579 Gene3D - 341 440 - -
Lcy2g1808 579 Pfam Protein kinase domain 35 218 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1808 579 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0281 Lcy-Chr13:3072507 Lcy2g1808 Lcy-Chr2:29933277 2.72E-185 dispersed
Lcy2g1808 Lcy-Chr2:29933277 Lcy8g1692 Lcy-Chr8:43517851 5.93E-128 dispersed
Lcy11g2067 Lcy-Chr11:44254479 Lcy2g1808 Lcy-Chr2:29933277 1.12E-50 transposed
Lcy2g1808 Lcy-Chr2:29933277 Lcy4g1952 Lcy-Chr4:45859161 9.06E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65753 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1808 K08867 - csv:101222641 918.687