Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g1808 | ATGGACGATACCCATTCATTCAATGGTTTCTCCACTCTTCTTCACCATCCAGATTTCTCTCACTATGTTGAAATTGATCCCACTGGCAGATATGGAAGATACGATCAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTTTTAAAGACATTGAAACATAAGAATATCATGAAATTCTATACTTCTTGGGTCGACACTGCAAATAGGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGTTAATGTTAGAGCAGTGAAGCGATGGTGTAGACAGATCTTGAGGGGTCTTCTCTATTTACACAGCCAAAACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGATCTTGGTCTTGCTGCTATCCTCCGGAAATCGCATGCTGATCATTGCGTCGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGGGAAAAAACCAGATGCCTTGTATAAAGTGAAGGATCCGAGCATGCGGCAATTTGTCGAGAAATGCTTGGCACCAGTCTCTTGTAGACTTTCGGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGCAAGTCAAAACTTTCAGATTTTCGGGAAGAACTGGATGGTATTGCTTCTACTACAGCACAACCTTTCCTTGAACAAGAGAAAAGTTTGAGCTCGATTAATTACAGTTTGGAGGCCTCAGATGAATGGAGGTGTCGTACAGTTCCGACTGTACCCGATGGTATCGAACTTTTTGAGGACGAGGATAATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAGCATTGTTTTAAGACTTAGGATTGCAGAGAAAGAAGGGCATATTCGAAACATATATTTCCCATTTGACACCAAGAATGATACGGCATTGACAGTTGCCACCGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATCGCTTCCTTGGTACCGGAGTGGAAGCCGGGGCCTGGCATAGATGAAACACCTCGCATCTCCTATGATGGTGGTTGTCAAAGCTACGATGCTTCTAACCATCCATCTGAGAATCATTTGATAGGGAATAAGCGAAGTGGAGCTAAACTCTATCAGATTTTAAACTGCAGCACAGATGAATGTGCTACAGCAGACAGACATTTCGAGCAGGTCTCCCTCGAAGCAGATCAGCCTCCACAGCCTGTGGTAGATAGCACACCAAAAGTGTCCAGCCAGCATTATCAGCGAAACTCAGTCCATGAAAACCAAGCTCTTGATTCTCGTAGTTTTAGGCGAAGCCATTCTGATCAAAATTACAAGAAAACAGGCCAATCAATCGCTGTTGGGGATAAGAAAGAAAAGTTACTCGATAGCAAAGCCACTGTCATTGCAAGAACTTCACTCAGAAGCCTACTGGGTTCCCGATCGCTGTCTACGGTTTCGTCCTATTGTGAAGATAAATTTGCATCTCAAATCCATTGGGAAATTAGATGGCTTTGGAATTGA | 1740 | 42.36 | MDDTHSFNGFSTLLHHPDFSHYVEIDPTGRYGRYDQILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNVRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELGKKPDALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKSKLSDFREELDGIASTTAQPFLEQEKSLSSINYSLEASDEWRCRTVPTVPDGIELFEDEDNDQLENLDNSIKGKIREDGSIVLRLRIAEKEGHIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVPEWKPGPGIDETPRISYDGGCQSYDASNHPSENHLIGNKRSGAKLYQILNCSTDECATADRHFEQVSLEADQPPQPVVDSTPKVSSQHYQRNSVHENQALDSRSFRRSHSDQNYKKTGQSIAVGDKKEKLLDSKATVIARTSLRSLLGSRSLSTVSSYCEDKFASQIHWEIRWLWN | 579 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 29933277 | 29936660 | + | Maker00032386 | Lcy2g1808 | 626573 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g1808 | 579 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 156 | 168 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g1808 | 579 | FunFam | Probable serine/threonine-protein kinase WNK1 | 17 | 113 | - | - | |
Lcy2g1808 | 579 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 21 | 213 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Lcy2g1808 | 579 | MobiDBLite | consensus disorder prediction | 481 | 502 | - | - | |
Lcy2g1808 | 579 | SMART | serkin_6 | 32 | 254 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g1808 | 579 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 344 | 399 | IPR024678 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Lcy2g1808 | 579 | MobiDBLite | consensus disorder prediction | 473 | 521 | - | - | |
Lcy2g1808 | 579 | Gene3D | Transferase(Phosphotransferase) domain 1 | 115 | 218 | - | - | |
Lcy2g1808 | 579 | SUPERFAMILY | Protein kinase-like (PK-like) | 35 | 255 | IPR011009 | - | |
Lcy2g1808 | 579 | ProSiteProfiles | Protein kinase domain profile. | 32 | 318 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g1808 | 579 | Gene3D | - | 341 | 440 | - | - | |
Lcy2g1808 | 579 | Pfam | Protein kinase domain | 35 | 218 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g1808 | 579 | Gene3D | Phosphorylase Kinase; domain 1 | 18 | 113 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0281 | Lcy-Chr13:3072507 | Lcy2g1808 | Lcy-Chr2:29933277 | 2.72E-185 | dispersed | |
Lcy2g1808 | Lcy-Chr2:29933277 | Lcy8g1692 | Lcy-Chr8:43517851 | 5.93E-128 | dispersed | |
Lcy11g2067 | Lcy-Chr11:44254479 | Lcy2g1808 | Lcy-Chr2:29933277 | 1.12E-50 | transposed | |
Lcy2g1808 | Lcy-Chr2:29933277 | Lcy4g1952 | Lcy-Chr4:45859161 | 9.06E-221 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65753 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g1808 | K08867 | - | csv:101222641 | 918.687 |