Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1824 ATGGATCCCCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGACGACGACGACGAGGAGGAGGAGGAATTGAACGACGAACCTTCCCCTTCCACTTCCTCCGCCGGCGCCACCGCTGTTCCTTCGGTTTCCGCCCTTGTCACTGTCGCCACTCCCGGCACCACCGACCGTCCCGTCGCCGTTGTTCCTCCCCCTTCGATCGCCTCCATCTCCTCCGCCGATCTGATCCGCCAGCGCCTCGAGACCGCCGCCGCCGAGCCTTTGACCTTGCAGGGCGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTCTGGACCGATGAGGATGAGATCGAGCTCTTGCAGGGGTTTTTGGATTACACGATGCAGCGGGGTACCACTCACCATCATCAGAACGATACGGCCTTGTTCTATGACCAGATCAAGTCCAAATTACAGCTCGATTTTAACAAGAATCAGCTCGTCGAGAAGCTTCGGAGGTTGAAGAAGAAGTACCGCAACGTTATCAGTAAGATTAGCTCTGGTAAGGAGTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTCGAGATCTCTCGCAAGATCTGGAGCACTACCGGCCGAATTGGAGTCGATGACAACGCTTTGGACGACGACGAGCCTCCTCCGCCTCCGTATGCGAACTACATGGACGCTAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCCACGCCGACTCCGAAATCGCGGAAGCGTTCGCGGCCTGGATCGGGGTTGAGAATGGACGGGCCGCGTTCGTCGAATGAGAATTTGAATAAAGAGAAGAACAGTACCTACAACAACAACAACAACAACGATAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCTTTGTTTAAGGAATTGTTGAGTACTTCCATGGGAGGAGGGCTCTGTGGAGGCAGAGGGTTCAGTGGGTTGGCTTTGCATCCAATTCCATTGAGCTTCGGTGGAGCTTCAATCAATTTCGGAAGTGGGGGAGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAGGTTTATTCGAAGAGGTTGGAGTTGGTTCAGGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1200 53.92 MDPRNDAVFPDEDLEDDEESLDDDDDDEEEEELNDEPSPSTSSAGATAVPSVSALVTVATPGTTDRPVAVVPPPSIASISSADLIRQRLETAAAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVISKISSGKEFNFKSPHDQATFEISRKIWSTTGRIGVDDNALDDDEPPPPPYANYMDARNEEMMANCAEKKPTPTPKSRKRSRPGSGLRMDGPRSSNENLNKEKNSTYNNNNNNDNVNNVAVAGLIEETVRSCLSPLFKELLSTSMGGGLCGGRGFSGLALHPIPLSFGGASINFGSGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30897878 30899077 + Maker00032453 Lcy2g1824 626589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1824 399 MobiDBLite consensus disorder prediction 271 294 - -
Lcy2g1824 399 MobiDBLite consensus disorder prediction 214 294 - -
Lcy2g1824 399 Coils Coil 163 183 - -
Lcy2g1824 399 MobiDBLite consensus disorder prediction 1 49 - -
Lcy2g1824 399 PANTHER BNAANNG10740D PROTEIN-RELATED 15 396 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy2g1824 399 MobiDBLite consensus disorder prediction 9 36 - -
Lcy2g1824 399 Coils Coil 373 393 - -
Lcy2g1824 399 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 113 209 IPR053932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1824 Lcy-Chr2:30897878 Lcy4g0586 Lcy-Chr4:7073881 7.17E-16 dispersed
Lcy2g1824 Lcy-Chr2:30897878 Lcy4g1950 Lcy-Chr4:45849871 2.18E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19778 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1824 - - - 0.0