Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1824 ATGGATCCCCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGACGACGACGACGAGGAGGAGGAGGAATTGAACGACGAACCTTCCCCTTCCACTTCCTCCGCCGGCGCCACCGCTGTTCCTTCGGTTTCCGCCCTTGTCACTGTCGCCACTCCCGGCACCACCGACCGTCCCGTCGCCGTTGTTCCTCCCCCTTCGATCGCCTCCATCTCCTCCGCCGATCTGATCCGCCAGCGCCTCGAGACCGCCGCCGCCGAGCCTTTGACCTTGCAGGGCGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTCTGGACCGATGAGGATGAGATCGAGCTCTTGCAGGGGTTTTTGGATTACACGATGCAGCGGGGTACCACTCACCATCATCAGAACGATACGGCCTTGTTCTATGACCAGATCAAGTCCAAATTACAGCTCGATTTTAACAAGAATCAGCTCGTCGAGAAGCTTCGGAGGTTGAAGAAGAAGTACCGCAACGTTATCAGTAAGATTAGCTCTGGTAAGGAGTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTCGAGATCTCTCGCAAGATCTGGAGCACTACCGGCCGAATTGGAGTCGATGACAACGCTTTGGACGACGACGAGCCTCCTCCGCCTCCGTATGCGAACTACATGGACGCTAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCCACGCCGACTCCGAAATCGCGGAAGCGTTCGCGGCCTGGATCGGGGTTGAGAATGGACGGGCCGCGTTCGTCGAATGAGAATTTGAATAAAGAGAAGAACAGTACCTACAACAACAACAACAACAACGATAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCTTTGTTTAAGGAATTGTTGAGTACTTCCATGGGAGGAGGGCTCTGTGGAGGCAGAGGGTTCAGTGGGTTGGCTTTGCATCCAATTCCATTGAGCTTCGGTGGAGCTTCAATCAATTTCGGAAGTGGGGGAGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAGGTTTATTCGAAGAGGTTGGAGTTGGTTCAGGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1200 53.92 MDPRNDAVFPDEDLEDDEESLDDDDDDEEEEELNDEPSPSTSSAGATAVPSVSALVTVATPGTTDRPVAVVPPPSIASISSADLIRQRLETAAAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVISKISSGKEFNFKSPHDQATFEISRKIWSTTGRIGVDDNALDDDEPPPPPYANYMDARNEEMMANCAEKKPTPTPKSRKRSRPGSGLRMDGPRSSNENLNKEKNSTYNNNNNNDNVNNVAVAGLIEETVRSCLSPLFKELLSTSMGGGLCGGRGFSGLALHPIPLSFGGASINFGSGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30897878 30899077 + Maker00032453 Lcy2g1824 626589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1824 399 MobiDBLite consensus disorder prediction 271 294 - -
Lcy2g1824 399 MobiDBLite consensus disorder prediction 214 294 - -
Lcy2g1824 399 Coils Coil 163 183 - -
Lcy2g1824 399 MobiDBLite consensus disorder prediction 1 49 - -
Lcy2g1824 399 PANTHER BNAANNG10740D PROTEIN-RELATED 15 396 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy2g1824 399 MobiDBLite consensus disorder prediction 9 36 - -
Lcy2g1824 399 Coils Coil 373 393 - -
Lcy2g1824 399 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 113 209 IPR053932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1824 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1824 Lcy-Chr2:30897878 Lcy4g0586 Lcy-Chr4:7073881 7.17E-16 dispersed
Lcy2g1824 Lcy-Chr2:30897878 Lcy4g1950 Lcy-Chr4:45849871 2.18E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g1824 . 56 219 GeBP Transcription Factor Family AT3G04930 62.9 8.3e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19778 None None None None Lcy TF