Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1834 ATGGGGTGTTTGGTTAGCCGAGAGGCGTCTTCTAGAAGTGTAGAGGCCCCTGTAGATAACGGGAAGAGGAATCAAATTACTGAGTCCCGTATCCAAGTCGAGCGTGTTCAGGAAAAAGAACTAGAGCATGTTAGTGCTAATGTAGAGGAGCATGTAAATGTGAGCAAGGAGGAGGAGCAGAAGGCTGATGGGGGTCAGGATCGCCCACGAGCGGAGCGGAGAAAGTCGAGGAAGGTTCCAAGACCAACTAACTTGCCAAACCATTCCCACGGGGAGCAAGTTGCTGCTGGATGGCCATCTTGGCTCACAGCAGTTTGTGGGGAGGCTCTCAATGGTTGGATTCCAAGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTACGGTTTGATAATCTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTCATCCTTAGGAGATTAAATCACAATAATGTTGTGAAATTGGAGGGGTTGGTTACATCGCGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAGCATGATTTAGCCGGTCTTGCTGCAAATCCATCAATCAAATTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAGCACTGTCACAATCGTCGTGTGCTTCACCGTGACATTAAAGGATCTAATCTGCTCATTGATAGTGGGGGAGTGCTTAAGATTGCTGACTTTGGATTAGCTTCTTTCTTTGATCCGAATCACAAGCACCCCATGACCAGTCGGGTAGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGAAGGCCAATTATGCCTGGCCGTACAGAGGTAGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAGTATTGGAAAAGGGCAAAACTGCCAAATGCAACCTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCACCCTCTTCACTGCCTCTTATAGAAACGCTTCTTGCAATTGATCCAGTAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTTATGACAGAGCCTTTAGCTTGCAAACCCTCGAACCTCCCAAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGAGATGATGAAGCTCGGAGACTAAGAGCAGCTAATAAAGCCCAGGGAGATGGAGCGAAGAAAACACGCACACGTGTTAGGGCTATTCCTGCTCCTGAAGCCAATGCCGAAATACAAACAAATATCGATAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTCCCCCCACCACACCAGGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATCGACCCATCCGGTGTTCCTCCCGACATACCATTCAGCTCGACACTGTTCACTTATTCCAAGGAACCAGGCCAAGCCTGGTCTGGTCCACTGGTCCCTGGTGCTGGCACTGATGCTCCTGCTAGGCAGAAGAAGCATGTGGGAGGTAAAGGCAAGAAAATCATGGTCTAA 1695 45.55 MGCLVSREASSRSVEAPVDNGKRNQITESRIQVERVQEKELEHVSANVEEHVNVSKEEEQKADGGQDRPRAERRKSRKVPRPTNLPNHSHGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPVERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAANKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPGQAWSGPLVPGAGTDAPARQKKHVGGKGKKIMV 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31184311 31197347 + Maker00032412 Lcy2g1834 626599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1834 564 PANTHER CELL DIVISION PROTEIN KINASE 120 405 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy2g1834 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g1834 564 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524(InterPro)
Lcy2g1834 564 MobiDBLite consensus disorder prediction 536 564 - -
Lcy2g1834 564 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Lcy2g1834 564 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1834 564 FunFam probable serine/threonine-protein kinase At1g54610 204 445 - -
Lcy2g1834 564 FunFam probable serine/threonine-protein kinase At1g54610 108 203 - -
Lcy2g1834 564 CDD STKc_CDK9_like 121 405 - -
Lcy2g1834 564 SMART serkin_6 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1834 564 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g1834 564 MobiDBLite consensus disorder prediction 1 93 - -
Lcy2g1834 564 MobiDBLite consensus disorder prediction 415 454 - -
Lcy2g1834 564 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Lcy2g1834 564 Gene3D Transferase(Phosphotransferase) domain 1 204 445 - -
Lcy2g1834 564 MobiDBLite consensus disorder prediction 28 73 - -
Lcy2g1834 564 MobiDBLite consensus disorder prediction 423 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1834 Lcy-Chr2:31184311 Lcy6g0602 Lcy-Chr6:5733147 8.84E-207 dispersed
Lcy11g1454 Lcy-Chr11:38437990 Lcy2g1834 Lcy-Chr2:31184311 1.07E-289 transposed
Lcy5g2098 Lcy-Chr5:44056799 Lcy2g1834 Lcy-Chr2:31184311 2.85E-234 transposed
Lcy7g1666 Lcy-Chr7:32940093 Lcy2g1834 Lcy-Chr2:31184311 2.38E-16 transposed
Lcy1g2091 Lcy-Chr1:28152621 Lcy2g1834 Lcy-Chr2:31184311 1.50E-10 wgd
Lcy2g1834 Lcy-Chr2:31184311 Lcy4g1937 Lcy-Chr4:45705740 3.18E-285 wgd
Lcy2g1834 Lcy-Chr2:31184311 Lcy7g1665 Lcy-Chr7:32912490 3.98E-177 wgd
Lcy2g1834 Lcy-Chr2:31184311 Lcy7g1603 Lcy-Chr7:31271690 1.83E-58 wgd
Lcy2g1834 Lcy-Chr2:31184311 Lcy9g0607 Lcy-Chr9:20148016 6.26E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65754 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1834 K08819 - csv:101215893 1102.43