Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g1844 | ATGACACCCATTTTGAGCTATGTTGTGTCCAAGTGGCAAGCGTTGTCCACTTCTGATCATGCCTCCGTGGTTTCCATTAACATATTTGTGGCTCTTCTCTGTGCTTGCATTGTGATCGGTCATCTTCTTGAGGAGACCCGGTGGATGAATGAGTCGATCACTGCCCTCTTCATTGGTCTGTTTAGCGGAGTCATCATTTTACTGGTCAGTGGAGGGAAAAGTTCACATCTGTTGCTCTTTAGCGAAGACACATTCTTTATTTATCTTCTGCCACCTATTATATTCAATGCTGGGTTTCAGGTGAAAAAGAAACAGTTCTTCGTTAACTTTATGACAATTATGCTGTTTGGCGCAATTGGTACATTAATCTCTTGTTCAATCATCTCATTAGGTGCTTTTCAGTTCTTCAAGAAAATGGATGTTGGATCACTGGATATTGCTGATATTTTAGCAATTGGAGCTATATTTGCTGCAACAGATTCTGTATGCACATTGCAGATATTAAACCAGGATGAAACGCCTCTACTTTACAGTCTAGTATTTGGCGAGGGTGTAGTGAATGATGCTACGTCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGACCTTACTAAAGTTGATGCAAGAGTTGCTTTACATTTTATTGGAAGCTTCTTTTATTTGTTTTCAACGAGCACTCTACTTGGAGTATTTGTTGGGCTGCTAAGTGCTTATACAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTCGCTCTAATGATGCTCATGGCATACCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACACTACACCTGGCATAATGTGACTGAGAGTTCAAGAGTTACCACTAAGTATGCAATGCTTCAACCTTTGCATGCTTTTGCTACCTTATCGTTCATTTCCGAGACATTTATCTTTGTTTATGTCGGCATGGATGCATTGGACATCGAGAAGTGGAGCTTTGTCAGTGATAGTCCGGGGACATCCGTTGCTGTGAGTGCAATATTACTAGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCATTTTTATCCAACTTAGCTAAAAAGTCAGGTTCTGAGAAAATTACCTTCAGGGAACAAGTTATAATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTTTAGCTTATCATCAGTTCACCAGAGCAGGGCACACTCAACTGCGAGGGAATGCAATGATGATCACTAGTACCATAACTGTTGTCCTTTTCAGCACAATGGTGTTTGGGTTATTGACCAAACCTCTTATAAAATGTTTGATACCTCAACCAAAACAAACTACTAGCATGTTATCGGACCCGGCAACTCCAAAATCATTCTCGGTACCCCTACTTGGAAGTGCACAGGATTCGGAGCTGGATCTTGACGGTCCCCATGTTCCTCGTCCAAGCAGTATCCGCGCACTCCTTGCAACTCCTACTCACACTGTTCATCGCTACTGGCGAAAGTTCGATGATGCCTTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTCCCCTTTGTTCCAGGATCCCCAACCGAAAGGGGTGGGCACTGA | 1635 | 42.63 | MTPILSYVVSKWQALSTSDHASVVSINIFVALLCACIVIGHLLEETRWMNESITALFIGLFSGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCSIISLGAFQFFKKMDVGSLDIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLTKVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYTIKKLYFGRHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKYAMLQPLHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFLSNLAKKSGSEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLIKCLIPQPKQTTSMLSDPATPKSFSVPLLGSAQDSELDLDGPHVPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGGH | 544 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 31920179 | 31926392 | - | Maker00032485 | Lcy2g1844 | 626609 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g1844 | 544 | Pfam | Sodium/hydrogen exchanger family | 31 | 450 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Lcy2g1844 | 544 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 534 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Lcy2g1844 | 544 | Gene3D | - | 145 | 197 | - | - | |
| Lcy2g1844 | 544 | NCBIfam | sodium/hydrogen exchanger 3 | 25 | 466 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy2g1844 | 544 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy2g1844 | 544 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy2g1844 | 544 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy2g1844 | 544 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g1844 | Lcy-Chr2:31920179 | Lcy3g1670 | Lcy-Chr3:43977179 | 1.87E-194 | dispersed | |
| Lcy2g1844 | Lcy-Chr2:31920179 | Lcy13g0204 | Lcy-Chr13:2118084 | 4.90E-270 | transposed |
Pathway information