Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1844 ATGACACCCATTTTGAGCTATGTTGTGTCCAAGTGGCAAGCGTTGTCCACTTCTGATCATGCCTCCGTGGTTTCCATTAACATATTTGTGGCTCTTCTCTGTGCTTGCATTGTGATCGGTCATCTTCTTGAGGAGACCCGGTGGATGAATGAGTCGATCACTGCCCTCTTCATTGGTCTGTTTAGCGGAGTCATCATTTTACTGGTCAGTGGAGGGAAAAGTTCACATCTGTTGCTCTTTAGCGAAGACACATTCTTTATTTATCTTCTGCCACCTATTATATTCAATGCTGGGTTTCAGGTGAAAAAGAAACAGTTCTTCGTTAACTTTATGACAATTATGCTGTTTGGCGCAATTGGTACATTAATCTCTTGTTCAATCATCTCATTAGGTGCTTTTCAGTTCTTCAAGAAAATGGATGTTGGATCACTGGATATTGCTGATATTTTAGCAATTGGAGCTATATTTGCTGCAACAGATTCTGTATGCACATTGCAGATATTAAACCAGGATGAAACGCCTCTACTTTACAGTCTAGTATTTGGCGAGGGTGTAGTGAATGATGCTACGTCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGACCTTACTAAAGTTGATGCAAGAGTTGCTTTACATTTTATTGGAAGCTTCTTTTATTTGTTTTCAACGAGCACTCTACTTGGAGTATTTGTTGGGCTGCTAAGTGCTTATACAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTCGCTCTAATGATGCTCATGGCATACCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACACTACACCTGGCATAATGTGACTGAGAGTTCAAGAGTTACCACTAAGTATGCAATGCTTCAACCTTTGCATGCTTTTGCTACCTTATCGTTCATTTCCGAGACATTTATCTTTGTTTATGTCGGCATGGATGCATTGGACATCGAGAAGTGGAGCTTTGTCAGTGATAGTCCGGGGACATCCGTTGCTGTGAGTGCAATATTACTAGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCATTTTTATCCAACTTAGCTAAAAAGTCAGGTTCTGAGAAAATTACCTTCAGGGAACAAGTTATAATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTTTAGCTTATCATCAGTTCACCAGAGCAGGGCACACTCAACTGCGAGGGAATGCAATGATGATCACTAGTACCATAACTGTTGTCCTTTTCAGCACAATGGTGTTTGGGTTATTGACCAAACCTCTTATAAAATGTTTGATACCTCAACCAAAACAAACTACTAGCATGTTATCGGACCCGGCAACTCCAAAATCATTCTCGGTACCCCTACTTGGAAGTGCACAGGATTCGGAGCTGGATCTTGACGGTCCCCATGTTCCTCGTCCAAGCAGTATCCGCGCACTCCTTGCAACTCCTACTCACACTGTTCATCGCTACTGGCGAAAGTTCGATGATGCCTTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTCCCCTTTGTTCCAGGATCCCCAACCGAAAGGGGTGGGCACTGA 1635 42.63 MTPILSYVVSKWQALSTSDHASVVSINIFVALLCACIVIGHLLEETRWMNESITALFIGLFSGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCSIISLGAFQFFKKMDVGSLDIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLTKVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYTIKKLYFGRHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKYAMLQPLHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFLSNLAKKSGSEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLIKCLIPQPKQTTSMLSDPATPKSFSVPLLGSAQDSELDLDGPHVPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGGH 544
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 31920179 31926392 - Maker00032485 Lcy2g1844 626609
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1844 544 Pfam Sodium/hydrogen exchanger family 31 450 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy2g1844 544 PANTHER SODIUM/HYDROGEN EXCHANGER 17 534 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Lcy2g1844 544 Gene3D - 145 197 - -
Lcy2g1844 544 NCBIfam sodium/hydrogen exchanger 3 25 466 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g1844 544 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g1844 544 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g1844 544 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g1844 544 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1844 Lcy-Chr2:31920179 Lcy3g1670 Lcy-Chr3:43977179 1.87E-194 dispersed
Lcy2g1844 Lcy-Chr2:31920179 Lcy13g0204 Lcy-Chr13:2118084 4.90E-270 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1844 - - - 0.0