Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g1889 ATGGGAGGGGACAGTGGAGCGAGGTTGGCGACGACGAAAGGAACAGAGCAGGGGGGCTGCGAAAAGAAGAAAACAACAAACGGGAGGGGGTGGGTTTTACATGGTGGTGGGTCTCGATCCATGGGTTCGATTTCACGCTGGTTTGGGTCTCTGTTTCAGAGTTGGTCTCCTCTCCGACGTGGATCTTTGAGCAATGGGCAAAAGAAAATTAATCACACTTTAAATTTTGGATTGGGGCGGACCCACGCAACAGGTTTTCTTTCGGCCTCTCAATTTGTCGTCTCTCTCGTCTGGGTTCTTTCCCCCAAAGCGCACGTTACCATTTCCCTTCACTTTTCCACTAAAATGCGCCTCAGGGCTTTGCTCGCTTTTCTTCTCCCCAGTTTGCTTTCGTTTGATTTGATGATGGCTGGAAGTAATCAAATCAATCTCAACGAGTCCAGGATGGTGGTTCCACTTAATACCTGGGTTCTCATTTCCAACTTTAAGTTGGCTTACAATCTTCTTCGTCGCCCTGATGGGACCTTCAATCGCCATTTGGCAGAGTTTCTCGACCGAAAAGTCCCTGCCAATGCTAACCCTGTTGATGGGACTTTCTCGTTCGATGTCATTATTGATCGTGCTACGAGTCTTCTATGTAGAATATATCGACCGGCCAATGGAGGCGAACCTCAGACTACTAATATTGTTGATCTTGAGAAGCCTGTGGATTCTGAGGCTGTTGTCCCTGTTATTGTTTTCTTTCATGGTGGAAGCTTTGCACATTCGTCTGCTAACAGTGCTATCTATGATACGCTATGTCGCCGGTTGGTCAGCCTTTGCAAGGCTGTTGTTGTCTCTGTGAACTATAGGCGTGCACCTGAAAATCGGTATCCATGTGCTTATGATGATGGATGGACTGCGCTCAATTGGGTGAATTCAAGGTCATGGCTTCAAAGTAAAGACTCAAAGACCTATATCTATTTGGCTGGCGATAGTTCTGGTGGAAACATTGTACACCATGTTGCATCAAGAGCAGTAAAGTCGGGGATCGAAGTATTGGGTAATATACTTCTCAATCCTATGTTTGGAGGGCAAGAAAGAACTAAATCTGAGATTCAGCTGGATGGAAAGTATTTCGTCACCATTCGGGATAGAGACTGGTATTGGAGGGCCTTCCTCCCTGAAGGGGAAGATAGAGACCATCCAGCATGTAATCCCTTCGGCCCGAAGGGTTATAGCCTCGAAGGAATCAAGTTCCCGAAGAGCCTTGTCGTGGTGGCTGGTTTAGATCTCGTCCAAGACTGGCAATTGGCATATGCCAAAGGGCTAGAGAATGATGGCCAAGAGGTGAAACTCTTGTATCTTGAGAAGGCAACAATTGGCTTCTACTTGCTACCGAATACTGAGCACTTCTATACTGTCATGGACGAGATAAGTGAATTTGTGAGTTCTGACTGTTAA 1443 46.64 MGGDSGARLATTKGTEQGGCEKKKTTNGRGWVLHGGGSRSMGSISRWFGSLFQSWSPLRRGSLSNGQKKINHTLNFGLGRTHATGFLSASQFVVSLVWVLSPKAHVTISLHFSTKMRLRALLAFLLPSLLSFDLMMAGSNQINLNESRMVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVDGTFSFDVIIDRATSLLCRIYRPANGGEPQTTNIVDLEKPVDSEAVVPVIVFFHGGSFAHSSANSAIYDTLCRRLVSLCKAVVVSVNYRRAPENRYPCAYDDGWTALNWVNSRSWLQSKDSKTYIYLAGDSSGGNIVHHVASRAVKSGIEVLGNILLNPMFGGQERTKSEIQLDGKYFVTIRDRDWYWRAFLPEGEDRDHPACNPFGPKGYSLEGIKFPKSLVVVAGLDLVQDWQLAYAKGLENDGQEVKLLYLEKATIGFYLLPNTEHFYTVMDEISEFVSSDC 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33694483 33699009 + Maker00032326 Lcy2g1889 626654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g1889 480 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 245 261 IPR002168 GO:0016787(InterPro)
Lcy2g1889 480 PANTHER ARYLACETAMIDE DEACETYLASE 170 470 IPR050466 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009939(PANTHER)|GO:0010325(PANTHER)|GO:0010331(PANTHER)|GO:0048444(PANTHER)
Lcy2g1889 480 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 320 332 IPR033140 -
Lcy2g1889 480 Gene3D alpha/beta hydrolase 131 478 IPR029058 -
Lcy2g1889 480 MobiDBLite consensus disorder prediction 1 34 - -
Lcy2g1889 480 FunFam Gibberellin receptor GID1 136 478 - -
Lcy2g1889 480 Pfam alpha/beta hydrolase fold 245 457 IPR013094 GO:0016787(InterPro)
Lcy2g1889 480 SUPERFAMILY alpha/beta-Hydrolases 193 476 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1889 Lcy-Chr2:33694483 Lcy3g1520 Lcy-Chr3:42079261 2.90E-71 dispersed
Lcy3g1655 Lcy-Chr3:43855009 Lcy2g1889 Lcy-Chr2:33694483 4.62E-165 transposed
Lcy2g1889 Lcy-Chr2:33694483 Lcy9g0353 Lcy-Chr9:9591959 3.14E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g1889 K14493 - csv:101213253 673.7