Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2014 ATGGAAGTTAGCAATTCAACAGCACCACCACCAAGAAACCACATCCATAACCATAACCACAGCAACCACAACCACCAACACCACACCCACAATGCCATTCTCAGCTCCAATTCCTTCCTCATCATCATAGCCTCCATAATCTCCATCACCATTTTCCTCGCCATCCTCCTCCTCATCTTCATGCTCCACCGCCTCAAATCCGCCCGAAACGCCGCCGCCTCCGCCGCACAATCCACCACATTCGTCCCCCACACCGCCATCCATTTCGACTCAAGCCCAGAAGTGAAAGGGGGCGGTTGCTTGTACGGAGGCAATTCAGGGAGGATTCCTCAGTACAGAATCAGGGGAGTTCAAGTGTTCACTTACAAGGAGCTGGAATTGGCCACTGACTGTTTCAGTGAAGCCAATGTCGTTGGAAATGGAAGATTTGGGATTGTGTACAGAGGGGTTCTTGGAGATGGAGCTCTCGTTGCTGTTAAAATGCTCCACAGAGAAGGCAAGCAGAGGGAACGTGCTTTCAGAATGGAGGTGGATCTCCTAAGCCGTTTGCACTCGCCCTGTTTGGTGGAGTTGCTTGGCTACTGTGCTGACCAACACCACAGGCTTCTGATATTTGAATTTATGCACAATGGCACTCTCCATCATCATCTGCATAATCCCAACAGTGAATCTCGGCCATTGGATTGGAATACTCGACTAAGGATAGCACTTGATTGTGCCAAGGCACTTGAGTTCCTCCATGAACATGCAGTTCCATCTGTTATCCATAGAAACTTCAAGTGCACCAATGTCCTACTGGATCAGGATTTCCGAGCCAAGGTGTCAGATTTCGGCTCGGCCAAGATGGGGTCCGATAAGATCAATGGTCAGATATCTACACAAGTACTTGGAACAACGGGATATCTAGCACCAGAGTATGCTTCTACAGGTAAACTTACTACAAAGTCAGATGTATACAGCTATGGTGTTGTGCTGCTAGAGCTATTGACAGGTCGAGTGCCGGTCGATATCAAGCGGCCACAGGGCGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGGCTAACTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCTATTCAAGGAAAATACTCCAAGAAGGATCTAATTCAGGTAGCAGCCATTGCTGCGATGTGCGTGCAGCCTGAAGCTGACTACCGGCCTCTGATGACCGATGTCGTGCAGTCACTGGTTCCTCTAGTTAAGAACCCGTCATCGTCATCTAGATTCTTCAATTGA 1263 48.61 MEVSNSTAPPPRNHIHNHNHSNHNHQHHTHNAILSSNSFLIIIASIISITIFLAILLLIFMLHRLKSARNAAASAAQSTTFVPHTAIHFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKELELATDCFSEANVVGNGRFGIVYRGVLGDGALVAVKMLHREGKQRERAFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESRPLDWNTRLRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPSSSSRFFN 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38132784 38135741 - Maker00027862 Lcy2g2014 626779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2014 420 CDD STKc_IRAK 138 408 - -
Lcy2g2014 420 ProSitePatterns Protein kinases ATP-binding region signature. 138 160 IPR017441 GO:0005524(InterPro)
Lcy2g2014 420 FunFam Somatic embryogenesis receptor kinase 1 105 207 - -
Lcy2g2014 420 MobiDBLite consensus disorder prediction 1 15 - -
Lcy2g2014 420 FunFam Receptor-like serine/threonine-protein kinase ALE2 208 419 - -
Lcy2g2014 420 PANTHER OS01G0750732 PROTEIN 16 410 IPR050885 -
Lcy2g2014 420 Gene3D Transferase(Phosphotransferase) domain 1 208 417 - -
Lcy2g2014 420 Gene3D Phosphorylase Kinase; domain 1 105 207 - -
Lcy2g2014 420 Pfam Protein tyrosine and serine/threonine kinase 136 405 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g2014 420 SUPERFAMILY Protein kinase-like (PK-like) 110 405 IPR011009 -
Lcy2g2014 420 MobiDBLite consensus disorder prediction 1 27 - -
Lcy2g2014 420 ProSiteProfiles Protein kinase domain profile. 132 409 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2014 Lcy-Chr2:38132784 Lcy4g0696 Lcy-Chr4:8389341 2.68E-141 dispersed
Lcy8g1724 Lcy-Chr8:43763056 Lcy2g2014 Lcy-Chr2:38132784 6.62E-38 dispersed
Lcy3g2004 Lcy-Chr3:47155211 Lcy2g2014 Lcy-Chr2:38132784 8.02E-85 transposed
Lcy1g2011 Lcy-Chr1:25540046 Lcy2g2014 Lcy-Chr2:38132784 2.77E-37 wgd
Lcy11g0875 Lcy-Chr11:25989704 Lcy2g2014 Lcy-Chr2:38132784 2.17E-61 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy2g2014 Lcy-Chr2:38132784 1.39E-72 wgd
Lcy12g1449 Lcy-Chr12:33002333 Lcy2g2014 Lcy-Chr2:38132784 1.28E-43 wgd
Lcy13g0695 Lcy-Chr13:10035141 Lcy2g2014 Lcy-Chr2:38132784 1.99E-21 wgd
Lcy2g1534 Lcy-Chr2:20265714 Lcy2g2014 Lcy-Chr2:38132784 2.37E-61 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy4g1019 Lcy-Chr4:18273942 1.87E-27 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy4g0776 Lcy-Chr4:9268109 2.04E-79 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy5g1479 Lcy-Chr5:35449049 6.33E-78 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy5g1291 Lcy-Chr5:30557563 3.81E-65 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy5g1658 Lcy-Chr5:38770561 1.51E-31 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy6g1411 Lcy-Chr6:20994050 1.76E-94 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy7g1441 Lcy-Chr7:24257963 8.29E-61 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy9g0533 Lcy-Chr9:16624107 1.57E-58 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy9g0903 Lcy-Chr9:30329421 1.79E-42 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy9g0711 Lcy-Chr9:24217776 7.12E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65756 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2014 - - - 0.0