Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2045 ATTCAATCGCAGAGAGATGCTTTGATTTGTTTTGGGAATGGCATGGCACTCTCTCTCTCATTCCTCAAATCTTCCTCTCTCTCTTTCTCCATTCTCTCTGTTTTCATCTTCTTCATCCTCTTCACTCCCAATCGCTCGCCGGAATCCGCTTCCAGAAGGTCCCTCATCGCCGCCGGCGACTCCAATTCCAGTGCCTCGCCGATCCCATCTTGTTCCTCTGTTGAATCTCACTCCGATGGCCTCATTAACTACTTGTATTTCCATTTATGCTTCTTCGATCAAAACCCATCTCTCTCTGTCCCTTTTCTCACTCTCCTTCTTCTCCTCCACTTCTACATCCTCATCAAAACCGCTCAGGATCACTTCTCCATTGTCACTTCCAAGCTCGCCTTTCACCTCAACTTGTCCCCGAGTATGGCTGCCGTGACGCTCTTGGCATTGGGTAATGGTGCTCCCGATGTGTTCGCGTCTGTTGCGGCGGTTCGTGGTGGGCAGTATCGAACTGGGTTCGGTGCAATTCTCTCTGCAGGGACGTTTGTTTCGGCTTTTGTGGTTGGATTCGTGGCCATTTATGCTGCTCCGTTTTCGGTGAATCCGGCTCAGTTTGTGAGGGATGTGCTGTTTTATTTAACTGCAGCATTGTTCTTGTTCTATGTGTATCTTAGTGCAGAAATTTTCCTCTGGCAAGCTATTGGGTTTGTTGGATTTTATCTGTTCTTTGTTGGGCTTGTGTTTTGGATGGATTTGGGAATGGGGAGTGGAAAAGCTAAGAGTGGGGCTGATATGGGAGTGGCCAGAGAAGCTGAAGTTTACCATGGTGAGGTGCCTCAAGACTGTGAGATTGGAGAAGGCTACAAAAATGTGGATGAAGGGAAAACCAATTTTGGCTTTTGGGAAGCTCTTGGAATGGTATGCTTTTTCAATCTGTTTAAAGATTTTGATGGATCAAGGGATGAGGTTCAGGATGATCTGATCCCAAAAGCATGGGAGGCTCCTGTCTCGTTTCTTTTGAAGCTCACCATTCCCCAGCCTGCACCTTCCGAATGGAGCAGATTCTTTACATCGGCGAATATTTCTCTGTGTCCTGTTGCCCTTCTATATGCCTGTAACTCATTCATGCCTTTTAACCATCCCATTGCTTTCCTCTTACCCCATACACATTTACCTCTTTGGTTAGTAGTTCTCTTAGCAAGCTCCTCTCTTGCAATTGTTCACTTTGTCATGGAAACTGAGCCCCCCAAAACCGAGCAAGTCTCTGTGGTGCTTGCAGCATTTGTCATGAGTGTATTTTGGATTTCGACCACTGCTGGGGAACTGCTGAACTGTCTTGCAGCTCTTGGGGTGCTTCTGAAACTCCCTCCAGCCCTACTCGGGCTCACTGTGCTTGCCTGGGGAAATTCAGTTGGGGATCTTGTGGCTGACGTTGCTCTTGCAAAAGCAGGCCAGCCCTTGCTGGCTATGGCTGGATGCTTTGCAGGGCCAATGTTTAACATGCTTGTTGGGCTCGGAACGGCTTTGGTTATACAAACAGCTAACAATTATCCAGAGGCCTATCAGCTTCAATTTCATATTGGAATCGTGATTGCATTCGTGTTCCTACTTTTCAGCCTGATGGGTTCCCTACTTGTAATTATTTGGTGCAGATTTCGGGTGCCTCGGTTTTGGGGATTCTGCCTTGTTGTGCTATATATCGTTTTCATGGCTACCAGCTTAGTGATGGCCAAGTTTTCTCCATGA 1737 47.27 IQSQRDALICFGNGMALSLSFLKSSSLSFSILSVFIFFILFTPNRSPESASRRSLIAAGDSNSSASPIPSCSSVESHSDGLINYLYFHLCFFDQNPSLSVPFLTLLLLLHFYILIKTAQDHFSIVTSKLAFHLNLSPSMAAVTLLALGNGAPDVFASVAAVRGGQYRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVNPAQFVRDVLFYLTAALFLFYVYLSAEIFLWQAIGFVGFYLFFVGLVFWMDLGMGSGKAKSGADMGVAREAEVYHGEVPQDCEIGEGYKNVDEGKTNFGFWEALGMVCFFNLFKDFDGSRDEVQDDLIPKAWEAPVSFLLKLTIPQPAPSEWSRFFTSANISLCPVALLYACNSFMPFNHPIAFLLPHTHLPLWLVVLLASSSLAIVHFVMETEPPKTEQVSVVLAAFVMSVFWISTTAGELLNCLAALGVLLKLPPALLGLTVLAWGNSVGDLVADVALAKAGQPLLAMAGCFAGPMFNMLVGLGTALVIQTANNYPEAYQLQFHIGIVIAFVFLLFSLMGSLLVIIWCRFRVPRFWGFCLVVLYIVFMATSLVMAKFSP 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39184478 39190147 + Maker00027897 Lcy2g2045 626810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2045 578 Gene3D - 135 262 IPR044880 -
Lcy2g2045 578 Gene3D - 354 572 IPR044880 -
Lcy2g2045 578 Pfam Sodium/calcium exchanger protein 105 246 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g2045 578 Pfam Sodium/calcium exchanger protein 422 571 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g2045 578 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 70 575 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0981 Lcy-Chr2:9138432 Lcy2g2045 Lcy-Chr2:39184478 2.68E-47 dispersed
Lcy11g0508 Lcy-Chr11:11634606 Lcy2g2045 Lcy-Chr2:39184478 8.32E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2045 K13754 - csv:101209909 856.67