Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g2047 ATGAAGTCCCATGTAGTCGTCTTCTCCAAATGCCTGCAAGAGGAGAATTTTTTGGTGCACAATCTTGCGCGCGTAGCTGCTACTAAAGGATTTTTTTTTTTTGTGAACTCTTCGTCGCAATGTGCGAAAATGGAGGAGTGGAAAAGGGATGCGAACATCCCAGTTTGGTTTTCCTCAGCTTTTGAGGAAAAGTTGGTTGTTCTCCAAGATCTTGCACAGTTGAGTATCATCTGTCTCTTGAAAAGGTTTGGAAAGTACTTGAACCGGTTCGAATATGTAAGATCTATAGTAAAGGAAGAAATTGAGGAGTCTGATATCATGATCCGATTTGTGGTTGTCGAGTTTTTTTCGACTGTGATGGATCAGCAAGGGCATGGCCAGCCTTCGTCCATGGGAGCCGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAGCCAAATGACTGTAGGCCCAACTTCTGGATCTGTTGTTACATCAGTTGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCCTATCAGCATATCCATCAGCAGCAGCAACAGCAGCTTCAACAACAGCTCCAGACTTTTTGGGCGAATCAGTACCAAGAGATTGAGAAGGTAACTGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCAGTTTTATTCGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGAAGGACACTTCAAAAGAATGACATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTTTGGTTGATATTGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATAACAGTTGGGGGGCCTGGAGATGCACTTCCGTACTGCTATATGCCATCTCAGCATGCACCTCAGGTTGGGGCGCCCGGAATGATTATGGGTAAGCCTGTGATGGACCCGACTATGTATGCTCAACAATCTCACCCTTACATGCCTCCACAAATGTGGCAGCATGCACAAGATCAAGCCCCTCCTGATCAATAA 1140 45.7 MKSHVVVFSKCLQEENFLVHNLARVAATKGFFFFVNSSSQCAKMEEWKRDANIPVWFSSAFEEKLVVLQDLAQLSIICLLKRFGKYLNRFEYVRSIVKEEIEESDIMIRFVVVEFFSTVMDQQGHGQPSSMGAVGSGGQIAYGSNLYHPSQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPTMYAQQSHPYMPPQMWQHAQDQAPPDQ 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39267745 39273684 + Maker00027837 Lcy2g2047 626812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g2047 379 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 195 309 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lcy2g2047 379 SUPERFAMILY Histone-fold 190 294 IPR009072 GO:0046982(InterPro)
Lcy2g2047 379 FunFam Nuclear transcription factor Y subunit gamma 187 300 - -
Lcy2g2047 379 Pfam Core histone H2A/H2B/H3/H4 183 285 IPR007125 GO:0003677(InterPro)
Lcy2g2047 379 Gene3D Histone, subunit A 184 300 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0055 Lcy-Chr2:391340 Lcy2g2047 Lcy-Chr2:39267745 1.25E-63 dispersed
Lcy2g2047 Lcy-Chr2:39267745 Lcy4g0296 Lcy-Chr4:3608183 4.16E-80 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19780 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g2047 K08066 - csv:101209664 424.091